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3ZE8

3D structure of the Ni-Fe-Se hydrogenase from D. vulgaris Hildenborough in the reduced state at 1.95 Angstroms

Functional Information from GO Data
ChainGOidnamespacecontents
A0008901molecular_functionferredoxin hydrogenase activity
A0009375cellular_componentferredoxin hydrogenase complex
A0051536molecular_functioniron-sulfur cluster binding
B0005515molecular_functionprotein binding
B0008901molecular_functionferredoxin hydrogenase activity
B0016151molecular_functionnickel cation binding
B0016491molecular_functionoxidoreductase activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue SF4 A 284
ChainResidue
AHIS208
ACYS211
ATYR213
ALEU214
ACYS232
AARG233
ACYS238
AVAL260

site_idAC2
Number of Residues9
Detailsbinding site for residue SF4 A 285
ChainResidue
ACYS247
ATRP252
ACYS259
ACYS265
AILE266
ACYS268
BARG182
BGLN187
ATHR243

site_idAC3
Number of Residues10
Detailsbinding site for residue SF4 A 286
ChainResidue
ACYS18
ACYS21
AGLY119
ATHR120
ACYS121
AGLY158
ACYS159
APRO160
BARG73
BHIS185

site_idAC4
Number of Residues4
Detailsbinding site for residue C15 A 1284
ChainResidue
ASER22
ALEU26
ALEU37
AHIS46

site_idAC5
Number of Residues1
Detailsbinding site for residue C15 A 1285
ChainResidue
BC151496

site_idAC6
Number of Residues3
Detailsbinding site for residue C15 A 1286
ChainResidue
AVAL10
APHE73
ALEU174

site_idAC7
Number of Residues12
Detailsbinding site for residue FCO B 500
ChainResidue
BCYS78
BHIS82
BALA420
BPRO421
BARG422
BLEU425
BALA444
BSER445
BSEC489
BPSW489
BCYS492
BNI501

site_idAC8
Number of Residues6
Detailsbinding site for residue NI B 501
ChainResidue
BOCS75
BCYS78
BPSW489
BSEC489
BCYS492
BFCO500

site_idAC9
Number of Residues6
Detailsbinding site for residue FE2 B 502
ChainResidue
BGLU56
BILE441
BHIS495
BHOH2046
BHOH2047
BHOH2253

site_idAD1
Number of Residues6
Detailsbinding site for residue CL B 504
ChainResidue
BCYS78
BTHR80
BALA81
BPHE110
BASN113
BPRO421

site_idAD2
Number of Residues5
Detailsbinding site for residue C15 B 1496
ChainResidue
AC151285
BGLN128
BVAL131
BPRO134
BTYR162

site_idAD3
Number of Residues6
Detailsbinding site for residue C15 B 1497
ChainResidue
AHOH2119
BPHE236
BLYS237
BLEU349
BPHE353
BILE355

Functional Information from PROSITE/UniProt
site_idPS00507
Number of Residues26
DetailsNI_HGENASE_L_1 Nickel-dependent hydrogenases large subunit signature 1. RGFEtilrgrdprdasqivQRiCGVC
ChainResidueDetails
BARG53-CYS78

site_idPS00508
Number of Residues10
DetailsNI_HGENASE_L_2 Nickel-dependent hydrogenases large subunit signature 2. FDPULGCav.H
ChainResidueDetails
BPHE486-HIS495

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PDB entries from 2024-10-30

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