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3ZBW

Crystal Structure of murine Angiogenin-3

Functional Information from GO Data
ChainGOidnamespacecontents
A0001525biological_processangiogenesis
A0001666biological_processresponse to hypoxia
A0001878biological_processresponse to yeast
A0001938biological_processpositive regulation of endothelial cell proliferation
A0002181biological_processcytoplasmic translation
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003779molecular_functionactin binding
A0004518molecular_functionnuclease activity
A0004519molecular_functionendonuclease activity
A0004540molecular_functionRNA nuclease activity
A0004549molecular_functiontRNA-specific ribonuclease activity
A0005102molecular_functionsignaling receptor binding
A0005507molecular_functioncopper ion binding
A0005576cellular_componentextracellular region
A0005604cellular_componentbasement membrane
A0005615cellular_componentextracellular space
A0005634cellular_componentnucleus
A0005694cellular_componentchromosome
A0005730cellular_componentnucleolus
A0005737cellular_componentcytoplasm
A0006898biological_processreceptor-mediated endocytosis
A0007165biological_processsignal transduction
A0008201molecular_functionheparin binding
A0009303biological_processrRNA transcription
A0009725biological_processresponse to hormone
A0010494cellular_componentcytoplasmic stress granule
A0015629cellular_componentactin cytoskeleton
A0016477biological_processcell migration
A0016787molecular_functionhydrolase activity
A0017148biological_processnegative regulation of translation
A0019731biological_processantibacterial humoral response
A0019732biological_processantifungal humoral response
A0023052biological_processsignaling
A0030139cellular_componentendocytic vesicle
A0030154biological_processcell differentiation
A0031410cellular_componentcytoplasmic vesicle
A0032055biological_processnegative regulation of translation in response to stress
A0032311cellular_componentangiogenin-PRI complex
A0033554biological_processcellular response to stress
A0034063biological_processstress granule assembly
A0036416biological_processtRNA stabilization
A0042277molecular_functionpeptide binding
A0042327biological_processpositive regulation of phosphorylation
A0042803molecular_functionprotein homodimerization activity
A0043022molecular_functionribosome binding
A0045087biological_processinnate immune response
A0046872molecular_functionmetal ion binding
A0048018molecular_functionreceptor ligand activity
A0048662biological_processnegative regulation of smooth muscle cell proliferation
A0050714biological_processpositive regulation of protein secretion
A0050830biological_processdefense response to Gram-positive bacterium
A0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
A0071425biological_processhematopoietic stem cell proliferation
B0001525biological_processangiogenesis
B0001666biological_processresponse to hypoxia
B0001878biological_processresponse to yeast
B0001938biological_processpositive regulation of endothelial cell proliferation
B0002181biological_processcytoplasmic translation
B0003676molecular_functionnucleic acid binding
B0003677molecular_functionDNA binding
B0003779molecular_functionactin binding
B0004518molecular_functionnuclease activity
B0004519molecular_functionendonuclease activity
B0004540molecular_functionRNA nuclease activity
B0004549molecular_functiontRNA-specific ribonuclease activity
B0005102molecular_functionsignaling receptor binding
B0005507molecular_functioncopper ion binding
B0005576cellular_componentextracellular region
B0005604cellular_componentbasement membrane
B0005615cellular_componentextracellular space
B0005634cellular_componentnucleus
B0005694cellular_componentchromosome
B0005730cellular_componentnucleolus
B0005737cellular_componentcytoplasm
B0006898biological_processreceptor-mediated endocytosis
B0007165biological_processsignal transduction
B0008201molecular_functionheparin binding
B0009303biological_processrRNA transcription
B0009725biological_processresponse to hormone
B0010494cellular_componentcytoplasmic stress granule
B0015629cellular_componentactin cytoskeleton
B0016477biological_processcell migration
B0016787molecular_functionhydrolase activity
B0017148biological_processnegative regulation of translation
B0019731biological_processantibacterial humoral response
B0019732biological_processantifungal humoral response
B0023052biological_processsignaling
B0030139cellular_componentendocytic vesicle
B0030154biological_processcell differentiation
B0031410cellular_componentcytoplasmic vesicle
B0032055biological_processnegative regulation of translation in response to stress
B0032311cellular_componentangiogenin-PRI complex
B0033554biological_processcellular response to stress
B0034063biological_processstress granule assembly
B0036416biological_processtRNA stabilization
B0042277molecular_functionpeptide binding
B0042327biological_processpositive regulation of phosphorylation
B0042803molecular_functionprotein homodimerization activity
B0043022molecular_functionribosome binding
B0045087biological_processinnate immune response
B0046872molecular_functionmetal ion binding
B0048018molecular_functionreceptor ligand activity
B0048662biological_processnegative regulation of smooth muscle cell proliferation
B0050714biological_processpositive regulation of protein secretion
B0050830biological_processdefense response to Gram-positive bacterium
B0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
B0071425biological_processhematopoietic stem cell proliferation
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACY A 1122
ChainResidue
AGLU41
AZN1125
AHOH2087

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 1122
ChainResidue
BHOH2016
BGLN12
BHIS13
BLYS40
BHIS113
BPHE114
BHOH2013

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 1123
ChainResidue
AGLN12
AHIS13
ALYS40
AHIS113
APHE114
AHOH2014
AHOH2015
AHOH2107

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ZN A 1124
ChainResidue
ATYR14
ALYS50
AHOH2116

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 1125
ChainResidue
AGLU41
AHIS82
AACY1122
AHOH2052
AHOH2087

Functional Information from PROSITE/UniProt
site_idPS00127
Number of Residues7
DetailsRNASE_PANCREATIC Pancreatic ribonuclease family signature. CKevNTF
ChainResidueDetails
ACYS39-PHE45

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsMotif: {"description":"Nucleolar localization signal","evidences":[{"source":"UniProtKB","id":"P03950","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PubMed","id":"23170778","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsActive site: {"description":"Proton donor","evidences":[{"source":"PubMed","id":"23170778","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"23170778","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsSite: {"description":"Critical for catalytic activity","evidences":[{"source":"PubMed","id":"23170778","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsModified residue: {"description":"Pyrrolidone carboxylic acid","evidences":[{"source":"UniProtKB","id":"P03950","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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