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3WYP

Crystal structure of wild-type core streptavidin in complex with D-biotin/biotin-D-sulfoxide at 1.3 A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0009374molecular_functionbiotin binding
B0009374molecular_functionbiotin binding
C0009374molecular_functionbiotin binding
D0009374molecular_functionbiotin binding
Functional Information from PDB Data
site_idAC1
Number of Residues16
DetailsBINDING SITE FOR RESIDUE BTN A 1001
ChainResidue
AASN23
ASER88
ATHR90
ATRP108
AASP128
AHOH1170
DTRP120
DGOL1002
ALEU25
ASER27
ATYR43
ASER45
AVAL47
AGLY48
AASN49
ATRP79

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 1002
ChainResidue
AGLN24
ALEU25
AGLY126
AHIS127
AGOL1004
AHOH1123
AHOH1145
AHOH1163

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 1003
ChainResidue
AGLY26
ASER27
ATHR28
AGLU44
AALA46

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1004
ChainResidue
AHIS127
AGOL1002
AHOH1189
AHOH1203
AHOH1213
CTHR129
CHOH1119

site_idAC5
Number of Residues16
DetailsBINDING SITE FOR RESIDUE BSO B 1001
ChainResidue
BASN23
BLEU25
BSER27
BTYR43
BSER45
BVAL47
BASN49
BTRP79
BSER88
BTHR90
BTRP108
BLEU110
BASP128
BHOH1147
BHOH1212
CTRP120

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 1002
ChainResidue
BGLN24
BLEU25
BGLY126
BHIS127
BHOH1124
BHOH1132

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 1003
ChainResidue
BGLY26
BSER27
BTHR28
BGLU44

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 1004
ChainResidue
AHIS87
BALA65
BTHR66
BHOH1167
BHOH1168
BHOH1211

site_idAC9
Number of Residues16
DetailsBINDING SITE FOR RESIDUE BTN D 1001
ChainResidue
ATRP120
DASN23
DLEU25
DSER27
DTYR43
DSER45
DVAL47
DGLY48
DASN49
DTRP79
DSER88
DTHR90
DTRP108
DASP128
DHOH1127
DHOH1224

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL D 1002
ChainResidue
ABTN1001
AHOH1170
DHOH1139
DHOH1170

site_idBC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL D 1003
ChainResidue
DGLN24
DLEU25
DGLY126
DHIS127
DHOH1121
DHOH1148
DHOH1174
DHOH1202
DHOH1222

site_idBC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL D 1004
ChainResidue
CSER62
CHOH1115
DLYS80
DASN81
DASN82
CASP36
CARG59

site_idBC4
Number of Residues15
DetailsBINDING SITE FOR RESIDUE BSO C 1001
ChainResidue
BTRP120
CASN23
CLEU25
CSER27
CTYR43
CSER45
CVAL47
CASN49
CTRP79
CSER88
CTHR90
CTRP108
CLEU110
CASP128
CGOL1003

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL C 1002
ChainResidue
BTRP120
CGLN24
CLEU25
CGLY126
CHIS127
CHOH1125

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL C 1003
ChainResidue
CSER112
CBSO1001
CHOH1134

site_idBC7
Number of Residues11
DetailsBINDING SITE FOR RESIDUE SO4 C 1004
ChainResidue
BGLY48
BHOH1148
BHOH1164
CALA65
CTHR66
CASP67
CLYS121
CHOH1137
CHOH1143
CHOH1178
CHOH1199

Functional Information from PROSITE/UniProt
site_idPS00577
Number of Residues15
DetailsAVIDIN_1 Avidin-like domain signature. NawKStlVGhDtFTK
ChainResidueDetails
AASN118-LYS132

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues20
DetailsBINDING:
ChainResidueDetails
ATYR43
BTRP120
DTYR43
DTYR54
DTRP92
DTRP108
DTRP120
CTYR43
CTYR54
CTRP92
CTRP108
ATYR54
CTRP120
ATRP92
ATRP108
ATRP120
BTYR43
BTYR54
BTRP92
BTRP108

237735

PDB entries from 2025-06-18

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