3WOM
Crystal structure of the DAP BII dipeptide complex II
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004175 | molecular_function | endopeptidase activity |
| A | 0004177 | molecular_function | aminopeptidase activity |
| A | 0006508 | biological_process | proteolysis |
| A | 0008239 | molecular_function | dipeptidyl-peptidase activity |
| A | 0009056 | biological_process | catabolic process |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0042803 | molecular_function | protein homodimerization activity |
| A | 0051603 | biological_process | proteolysis involved in protein catabolic process |
| A | 0070009 | molecular_function | serine-type aminopeptidase activity |
| B | 0004175 | molecular_function | endopeptidase activity |
| B | 0004177 | molecular_function | aminopeptidase activity |
| B | 0006508 | biological_process | proteolysis |
| B | 0008239 | molecular_function | dipeptidyl-peptidase activity |
| B | 0009056 | biological_process | catabolic process |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0042803 | molecular_function | protein homodimerization activity |
| B | 0051603 | biological_process | proteolysis involved in protein catabolic process |
| B | 0070009 | molecular_function | serine-type aminopeptidase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE GOL A 803 |
| Chain | Residue |
| A | THR598 |
| B | HOH969 |
| A | PHE600 |
| A | ILE639 |
| A | HOH919 |
| A | HOH1054 |
| A | HOH1128 |
| A | HOH1404 |
| B | ASP593 |
| B | GLY594 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL A 804 |
| Chain | Residue |
| A | ASP59 |
| A | LYS251 |
| A | HIS252 |
| A | TRP253 |
| A | LYS255 |
| A | HOH1221 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL A 805 |
| Chain | Residue |
| A | GLY68 |
| A | ARG175 |
| A | HOH951 |
| A | HOH1285 |
| A | HOH1351 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL A 806 |
| Chain | Residue |
| A | ARG413 |
| A | LEU535 |
| A | GLU539 |
| A | ARG542 |
| A | HOH1101 |
| A | HOH1388 |
| site_id | AC5 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE GOL A 807 |
| Chain | Residue |
| A | ASN101 |
| A | GLN318 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL A 808 |
| Chain | Residue |
| A | ALA257 |
| A | ASP258 |
| A | ARG699 |
| A | HOH920 |
| A | HOH1311 |
| A | HOH1441 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN A 809 |
| Chain | Residue |
| A | GLU635 |
| A | HIS665 |
| A | HOH1435 |
| A | HOH1436 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN A 810 |
| Chain | Residue |
| A | GLU505 |
| A | LYS508 |
| A | HOH1427 |
| B | GLU438 |
| site_id | AC9 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL B 803 |
| Chain | Residue |
| A | ASP593 |
| A | GLY594 |
| B | THR598 |
| B | PHE600 |
| B | ILE639 |
| B | HOH923 |
| B | HOH945 |
| B | HOH1129 |
| site_id | BC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL B 804 |
| Chain | Residue |
| B | ASP59 |
| B | LYS251 |
| B | HIS252 |
| B | TRP253 |
| B | LYS255 |
| B | ALA469 |
| site_id | BC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL B 805 |
| Chain | Residue |
| B | ARG175 |
| B | ASN190 |
| B | HOH959 |
| site_id | BC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL B 806 |
| Chain | Residue |
| B | ALA257 |
| B | ASP258 |
| B | ARG699 |
| B | HOH922 |
| B | HOH926 |
| B | HOH960 |
| site_id | BC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN B 807 |
| Chain | Residue |
| B | LYS47 |
| B | GLU635 |
| B | HIS665 |
| B | HOH1290 |
| site_id | BC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN B 808 |
| Chain | Residue |
| A | GLU438 |
| B | GLU505 |
| B | LYS508 |
| B | HOH1289 |
| site_id | BC6 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR LINKED RESIDUES A 801 to 802 |
| Chain | Residue |
| A | HIS86 |
| A | ASN215 |
| A | TRP216 |
| A | ARG220 |
| A | ASN330 |
| A | ILE652 |
| A | THR653 |
| A | GLY654 |
| A | GLY655 |
| A | SER657 |
| A | PHE673 |
| A | ASP674 |
| A | GLY675 |
| A | SER679 |
| A | HOH941 |
| A | HOH1229 |
| A | HOH1431 |
| site_id | BC7 |
| Number of Residues | 16 |
| Details | BINDING SITE FOR LINKED RESIDUES B 801 to 802 |
| Chain | Residue |
| B | SER657 |
| B | PHE673 |
| B | ASP674 |
| B | GLY675 |
| B | SER679 |
| B | HOH955 |
| B | HOH983 |
| B | HOH1291 |
| B | HIS86 |
| B | ASN215 |
| B | TRP216 |
| B | ASN330 |
| B | ILE652 |
| B | THR653 |
| B | GLY654 |
| B | GLY655 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 6 |
| Details | ACT_SITE: Charge relay system => ECO:0000305|PubMed:24598890, ECO:0000305|PubMed:24827749 |
| Chain | Residue | Details |
| A | HIS86 | |
| A | ASP224 | |
| A | SER657 | |
| B | HIS86 | |
| B | ASP224 | |
| B | SER657 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 8 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:24827749 |
| Chain | Residue | Details |
| A | ASN215 | |
| A | ASN330 | |
| A | GLY655 | |
| A | PHE673 | |
| B | ASN215 | |
| B | ASN330 | |
| B | GLY655 | |
| B | PHE673 |
