Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3WNH

Cyclic hexapeptide PKZDNv in complex with HIV-1 integrase

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0015074biological_processDNA integration
B0003676molecular_functionnucleic acid binding
B0015074biological_processDNA integration
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CD A 1001
ChainResidue
ACYS65
AHIS67
AGLU92
ACD1002
BASP131

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CD A 1002
ChainResidue
ACL1003
AHOH1104
AHOH1107
ACYS65
AGLU92
AASP116
ACD1001

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 1003
ChainResidue
ACYS65
AASP116
AASN120
ACD1002

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 1004
ChainResidue
ALYS71
AARG166
AGLU170
AHIS171
ALEU172
AHOH1111
AHOH1153
AHOH1200

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 1005
ChainResidue
ATHR66
AHIS67
ALYS159
AHOH1155
AHOH1201
BARG127
BHOH460

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1006
ChainResidue
AGLY123
AALA124
ATHR125
AHOH1116
AHOH1121
AHOH1134

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CD B 301
ChainResidue
AASP131
BCYS65
BHIS67
BGLU92

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CD B 302
ChainResidue
BCYS65
BGLU92
BASP116
BCL303
BHOH402
BHOH408

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B 303
ChainResidue
BCYS65
BASP116
BASN120
BCD302
BHOH409

site_idBC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 B 304
ChainResidue
BLYS71
BARG166
BGLU170
BHIS171
BLEU172
BHOH410
BHOH434
BHOH498
BHOH510

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 305
ChainResidue
BTHR66
BHIS67
BLYS159
BHOH477
BHOH488

site_idBC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 306
ChainResidue
BGLY123
BALA124
BTHR125
BHOH413
BHOH423
BHOH430
BHOH487

site_idBC4
Number of Residues11
DetailsBINDING SITE FOR CHAIN C OF PK(NLE)DN(DVA) PEPTIDE
ChainResidue
AGLN95
ATHR125
ATRP132
BASP167
BGLN168
BALA169
BGLU170
BHIS171
BTHR174
CHOH101
CHOH103

site_idBC5
Number of Residues11
DetailsBINDING SITE FOR CHAIN D OF PK(NLE)DN(DVA) PEPTIDE
ChainResidue
AASP167
AGLN168
AALA169
AGLU170
AHIS171
ATHR174
AMET178
BGLN95
BTRP132
DHOH101
DHOH102

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP64
AASP116
BASP64
BASP116

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P04585
ChainResidueDetails
AGLU152
BGLU152

226262

PDB entries from 2024-10-16

PDB statisticsPDBj update infoContact PDBjnumon