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3WNF

Cyclic hexapeptide CKIDNC in complex with HIV-1 integrase

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0015074biological_processDNA integration
B0003676molecular_functionnucleic acid binding
B0015074biological_processDNA integration
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CD A 1001
ChainResidue
ACYS65
AGLU92
AASP116
ACL1003
AHOH1111
BHOH406

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CD A 1002
ChainResidue
BASP131
ACYS65
AHIS67
AGLU92

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 1003
ChainResidue
ACYS65
AASP116
AASN120
ACD1001

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1004
ChainResidue
ALYS71
AARG166
AHIS171
ALEU172
AHOH1110
AHOH1157

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 1005
ChainResidue
ATHR66
AHIS67
ALYS159
BARG127

site_idAC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 1006
ChainResidue
AGLY94
AGLY123
AALA124
ATHR125
AVAL126
AHOH1116
AHOH1165
AHOH1166
DNH28

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CD B 301
ChainResidue
AASP131
BCYS65
BHIS67
BGLU92

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CD B 302
ChainResidue
AHOH1107
BCYS65
BGLU92
BASP116
BCL303
BHOH410

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 303
ChainResidue
BCYS65
BASP116
BASN120
BCD302

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 304
ChainResidue
BLYS71
BARG166
BHIS171
BLEU172
BHOH411
BHOH455

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 305
ChainResidue
AARG127
BTHR66
BHIS67
BLYS159

site_idBC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 B 306
ChainResidue
BGLY94
BGLY123
BALA124
BTHR125
BVAL126
BHOH425
BHOH440
BHOH463
BHOH464
CNH28

site_idBC4
Number of Residues13
DetailsBINDING SITE FOR CHAIN C OF CKIDNC PEPTIDE
ChainResidue
AASP167
AGLN168
AALA169
AGLU170
AHIS171
ATHR174
AHOH1121
BGLN95
BALA124
BTHR125
BGLY189
BSO4306
CHOH101

site_idBC5
Number of Residues13
DetailsBINDING SITE FOR CHAIN D OF CKIDNC PEPTIDE
ChainResidue
AGLN95
AALA124
ATHR125
AALA128
ASO41006
BASP167
BGLN168
BALA169
BGLU170
BHIS171
BTHR174
BHOH408
BHOH454

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP64
AASP116
BASP64
BASP116

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P04585
ChainResidueDetails
AGLU152
BGLU152

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PDB entries from 2024-07-24

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