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3WEV

Crystal structure of the Schiff base intermediate of L-Lys epsilon-oxidase from Marinomonas mediterranea with L-Lys

Functional Information from GO Data
ChainGOidnamespacecontents
A0005576cellular_componentextracellular region
A0016491molecular_functionoxidoreductase activity
A0031640biological_processkilling of cells of another organism
A0033736molecular_functionL-lysine 6-oxidase activity
A0042742biological_processdefense response to bacterium
A0048038molecular_functionquinone binding
A1900191biological_processnegative regulation of single-species biofilm formation
B0005576cellular_componentextracellular region
B0016491molecular_functionoxidoreductase activity
B0031640biological_processkilling of cells of another organism
B0033736molecular_functionL-lysine 6-oxidase activity
B0042742biological_processdefense response to bacterium
B0048038molecular_functionquinone binding
B1900191biological_processnegative regulation of single-species biofilm formation
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE LYS A 801
ChainResidue
AVAL386
ACYS448
APRO449
AASN515
AGLN519
ALYS530
ATRP580
ATRQ581
AHOH1157

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 802
ChainResidue
AGLU98
APHE99
AARG122
AHOH1082
AHOH1308
AHOH1357
AHOH1389

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 803
ChainResidue
AHIS286
ATYR287

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 804
ChainResidue
AGLY109
AARG110
AHOH1132

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 805
ChainResidue
ALEU106
AASN459
ACYS490
AHOH986

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 806
ChainResidue
ATYR577
ATRP587
AASN611
AHOH1034
AHOH1234

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 807
ChainResidue
AASN21
AASP51
AGLU52
AHOH1226
AHOH1401

site_idAC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO A 808
ChainResidue
AARG305

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 809
ChainResidue
ALYS352
AHOH992
AHOH1426

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 810
ChainResidue
AARG271
ATYR280
AGLY285

site_idBC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE LYS B 801
ChainResidue
BVAL386
BCYS448
BASN515
BGLN519
BLYS530
BTRP580
BTRQ581
BHOH1024

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 802
ChainResidue
BHIS286
BTYR287
BHOH1459

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 803
ChainResidue
BGLY109
BARG110
BHOH1231

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE DIO B 804
ChainResidue
BLEU676
BPRO677
BVAL678
BPHE679
BHOH1377
BHOH1408

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 805
ChainResidue
BASN515
BTYR619

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 806
ChainResidue
BLEU106
BASN459
BCYS490
BHOH939

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 807
ChainResidue
BASN21
BASP51
BGLU52
BHOH1410

site_idBC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 808
ChainResidue
BSER432
BASP433
BMET434

site_idCC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 809
ChainResidue
BARG305
BHOH1341
BHOH1424

site_idCC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 810
ChainResidue
BARG329
BGLY331
BPHE421

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: Tryptophylquinone
ChainResidueDetails
ATRQ581
BTRQ581

site_idSWS_FT_FI2
Number of Residues4
DetailsCROSSLNK: 4'-cysteinyl-tryptophylquinone (Cys-Trp)
ChainResidueDetails
ACYS516
ATRQ581
BCYS516
BTRQ581

221051

PDB entries from 2024-06-12

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