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3WEU

Crystal structure of the L-Lys epsilon-oxidase from Marinomonas mediterranea

Functional Information from GO Data
ChainGOidnamespacecontents
A0005576cellular_componentextracellular region
A0016491molecular_functionoxidoreductase activity
A0031640biological_processkilling of cells of another organism
A0033736molecular_functionL-lysine 6-oxidase activity
A0042742biological_processdefense response to bacterium
A0048038molecular_functionquinone binding
A1900191biological_processnegative regulation of single-species biofilm formation
B0005576cellular_componentextracellular region
B0016491molecular_functionoxidoreductase activity
B0031640biological_processkilling of cells of another organism
B0033736molecular_functionL-lysine 6-oxidase activity
B0042742biological_processdefense response to bacterium
B0048038molecular_functionquinone binding
B1900191biological_processnegative regulation of single-species biofilm formation
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 801
ChainResidue
AGLU98
APHE99
AARG122
AHOH1085
AHOH1331
AHOH1389
AHOH1429

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 802
ChainResidue
AHIS286
ATYR287

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 803
ChainResidue
AGLY109
AARG110
AHOH1138

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE DIO A 804
ChainResidue
AGLY615
AASN617
ALEU676
APRO677
AVAL678
APHE679

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 805
ChainResidue
ACYS448
AASN515
ATRP580
ATRQ581
AHOH1104
AHOH1167

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 806
ChainResidue
AASN515
ATYR619

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 807
ChainResidue
ALEU106
AASN459
ACYS490
AHOH986

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 808
ChainResidue
ATYR577
ATRP587
AASN611
AHOH1028
AHOH1036
AHOH1251

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 809
ChainResidue
APHE514
AASN515
ATHR517
AHOH964
AHOH1367
AHOH1409

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 810
ChainResidue
AASN21
AASP51
AGLU52
AHOH1241
AHOH1443

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 811
ChainResidue
AARG305
AHOH1083

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 812
ChainResidue
AARG271
ALYS352
AHOH992
AHOH1363

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 813
ChainResidue
AARG271
ATYR280
AGLY285

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 801
ChainResidue
BGLU98
BPHE99
BARG122
BHOH1135

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 802
ChainResidue
BGLY285
BHIS286
BTYR287

site_idBC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 803
ChainResidue
BGLY109
BARG110
BHOH1245

site_idBC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE DIO B 804
ChainResidue
BASN617
BLEU676
BPRO677
BPHE679
BHOH1439
BHOH1451

site_idBC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 805
ChainResidue
BASN515
BTYR619

site_idCC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 806
ChainResidue
BCYS448
BASN515
BTRP580
BTRQ581
BHOH1009
BHOH1057
BHOH1357

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 807
ChainResidue
BLEU106
BASN459
BCYS490
BHOH939

site_idCC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 808
ChainResidue
BASN21
BASP51
BGLU52
BHOH1453

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 809
ChainResidue
BPHE514
BASN515
BTHR517
BHOH1085
BHOH1419

site_idCC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 810
ChainResidue
BSER432
BASP433
BMET434

site_idCC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 811
ChainResidue
BGLU624
BGLY175
BSER620

site_idCC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 812
ChainResidue
BARG305
BHOH1369
BHOH1468

site_idCC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 813
ChainResidue
BARG329
BGLY331
BPHE421

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: Tryptophylquinone
ChainResidueDetails
ATRQ581
BTRQ581

site_idSWS_FT_FI2
Number of Residues4
DetailsCROSSLNK: 4'-cysteinyl-tryptophylquinone (Cys-Trp)
ChainResidueDetails
ACYS516
ATRQ581
BCYS516
BTRQ581

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PDB entries from 2024-07-31

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