3WBB
Crystal Structures of meso-diaminopimelate dehydrogenase from Symbiobacterium thermophilum
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0008652 | biological_process | amino acid biosynthetic process |
| A | 0009085 | biological_process | L-lysine biosynthetic process |
| A | 0009089 | biological_process | L-lysine biosynthetic process via diaminopimelate |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0019877 | biological_process | diaminopimelate biosynthetic process |
| A | 0047850 | molecular_function | diaminopimelate dehydrogenase activity |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0008652 | biological_process | amino acid biosynthetic process |
| B | 0009085 | biological_process | L-lysine biosynthetic process |
| B | 0009089 | biological_process | L-lysine biosynthetic process via diaminopimelate |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0019877 | biological_process | diaminopimelate biosynthetic process |
| B | 0047850 | molecular_function | diaminopimelate dehydrogenase activity |
| C | 0000166 | molecular_function | nucleotide binding |
| C | 0008652 | biological_process | amino acid biosynthetic process |
| C | 0009085 | biological_process | L-lysine biosynthetic process |
| C | 0009089 | biological_process | L-lysine biosynthetic process via diaminopimelate |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0019877 | biological_process | diaminopimelate biosynthetic process |
| C | 0047850 | molecular_function | diaminopimelate dehydrogenase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE GOL A 301 |
| Chain | Residue |
| A | ARG103 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL A 302 |
| Chain | Residue |
| A | LEU244 |
| A | HOH513 |
| A | HOH537 |
| C | ARG250 |
| C | HOH607 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL A 303 |
| Chain | Residue |
| A | GLU75 |
| A | TYR76 |
| A | HOH701 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL A 304 |
| Chain | Residue |
| A | ARG130 |
| A | PHE146 |
| C | LYS297 |
| site_id | AC5 |
| Number of Residues | 30 |
| Details | BINDING SITE FOR RESIDUE NAP A 305 |
| Chain | Residue |
| A | GLY10 |
| A | TYR11 |
| A | GLY12 |
| A | ASN13 |
| A | VAL14 |
| A | ARG35 |
| A | ARG36 |
| A | CYS67 |
| A | VAL68 |
| A | PRO69 |
| A | THR70 |
| A | TYR76 |
| A | SER90 |
| A | ASP92 |
| A | GLY120 |
| A | TRP121 |
| A | ASP122 |
| A | PRO123 |
| A | ASN253 |
| A | THR257 |
| A | HOH402 |
| A | HOH403 |
| A | HOH413 |
| A | HOH423 |
| A | HOH489 |
| A | HOH503 |
| A | HOH551 |
| A | HOH628 |
| A | HOH727 |
| A | HOH728 |
| site_id | AC6 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE GOL B 401 |
| Chain | Residue |
| B | ARG130 |
| B | LYS297 |
| site_id | AC7 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE GOL B 402 |
| Chain | Residue |
| B | TYR91 |
| B | ARG103 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL B 403 |
| Chain | Residue |
| B | GLU232 |
| B | ARG246 |
| B | GLU248 |
| B | HOH634 |
| B | HOH881 |
| site_id | AC9 |
| Number of Residues | 28 |
| Details | BINDING SITE FOR RESIDUE NAP B 404 |
| Chain | Residue |
| B | GLY10 |
| B | TYR11 |
| B | GLY12 |
| B | ASN13 |
| B | VAL14 |
| B | ARG35 |
| B | ARG36 |
| B | CYS67 |
| B | VAL68 |
| B | PRO69 |
| B | THR70 |
| B | TYR76 |
| B | SER90 |
| B | ASP92 |
| B | GLY120 |
| B | TRP121 |
| B | ASP122 |
| B | PRO123 |
| B | ASN253 |
| B | THR257 |
| B | HOH516 |
| B | HOH566 |
| B | HOH567 |
| B | HOH580 |
| B | HOH597 |
| B | HOH629 |
| B | HOH676 |
| B | HOH859 |
| site_id | BC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL C 301 |
| Chain | Residue |
| B | GLY84 |
| C | ARG50 |
| C | GLN57 |
| site_id | BC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL C 302 |
| Chain | Residue |
| C | TYR91 |
| C | ASP96 |
| C | ARG103 |
| site_id | BC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL C 303 |
| Chain | Residue |
| C | GLU232 |
| C | LEU244 |
| C | ARG246 |
| C | HOH519 |
| C | HOH523 |
| C | HOH529 |
| site_id | BC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL C 304 |
| Chain | Residue |
| A | LYS297 |
| C | HIS94 |
| C | ARG130 |
| site_id | BC5 |
| Number of Residues | 32 |
| Details | BINDING SITE FOR RESIDUE NAP C 305 |
| Chain | Residue |
| C | ARG35 |
| C | ARG36 |
| C | CYS67 |
| C | VAL68 |
| C | PRO69 |
| C | THR70 |
| C | ARG71 |
| C | SER72 |
| C | TYR76 |
| C | SER90 |
| C | ASP92 |
| C | GLY120 |
| C | TRP121 |
| C | ASP122 |
| C | PRO123 |
| C | ASN253 |
| C | THR257 |
| C | HOH405 |
| C | HOH431 |
| C | HOH495 |
| C | HOH518 |
| C | HOH538 |
| C | HOH638 |
| C | HOH640 |
| C | HOH654 |
| C | HOH707 |
| C | HOH809 |
| C | GLY10 |
| C | TYR11 |
| C | GLY12 |
| C | ASN13 |
| C | VAL14 |
