3WBB
Crystal Structures of meso-diaminopimelate dehydrogenase from Symbiobacterium thermophilum
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0009085 | biological_process | lysine biosynthetic process |
A | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0019877 | biological_process | diaminopimelate biosynthetic process |
A | 0047850 | molecular_function | diaminopimelate dehydrogenase activity |
B | 0000166 | molecular_function | nucleotide binding |
B | 0009085 | biological_process | lysine biosynthetic process |
B | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0019877 | biological_process | diaminopimelate biosynthetic process |
B | 0047850 | molecular_function | diaminopimelate dehydrogenase activity |
C | 0000166 | molecular_function | nucleotide binding |
C | 0009085 | biological_process | lysine biosynthetic process |
C | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0019877 | biological_process | diaminopimelate biosynthetic process |
C | 0047850 | molecular_function | diaminopimelate dehydrogenase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE GOL A 301 |
Chain | Residue |
A | ARG103 |
site_id | AC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL A 302 |
Chain | Residue |
A | LEU244 |
A | HOH513 |
A | HOH537 |
C | ARG250 |
C | HOH607 |
site_id | AC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL A 303 |
Chain | Residue |
A | GLU75 |
A | TYR76 |
A | HOH701 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL A 304 |
Chain | Residue |
A | ARG130 |
A | PHE146 |
C | LYS297 |
site_id | AC5 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE NAP A 305 |
Chain | Residue |
A | GLY10 |
A | TYR11 |
A | GLY12 |
A | ASN13 |
A | VAL14 |
A | ARG35 |
A | ARG36 |
A | CYS67 |
A | VAL68 |
A | PRO69 |
A | THR70 |
A | TYR76 |
A | SER90 |
A | ASP92 |
A | GLY120 |
A | TRP121 |
A | ASP122 |
A | PRO123 |
A | ASN253 |
A | THR257 |
A | HOH402 |
A | HOH403 |
A | HOH413 |
A | HOH423 |
A | HOH489 |
A | HOH503 |
A | HOH551 |
A | HOH628 |
A | HOH727 |
A | HOH728 |
site_id | AC6 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE GOL B 401 |
Chain | Residue |
B | ARG130 |
B | LYS297 |
site_id | AC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE GOL B 402 |
Chain | Residue |
B | TYR91 |
B | ARG103 |
site_id | AC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL B 403 |
Chain | Residue |
B | GLU232 |
B | ARG246 |
B | GLU248 |
B | HOH634 |
B | HOH881 |
site_id | AC9 |
Number of Residues | 28 |
Details | BINDING SITE FOR RESIDUE NAP B 404 |
Chain | Residue |
B | GLY10 |
B | TYR11 |
B | GLY12 |
B | ASN13 |
B | VAL14 |
B | ARG35 |
B | ARG36 |
B | CYS67 |
B | VAL68 |
B | PRO69 |
B | THR70 |
B | TYR76 |
B | SER90 |
B | ASP92 |
B | GLY120 |
B | TRP121 |
B | ASP122 |
B | PRO123 |
B | ASN253 |
B | THR257 |
B | HOH516 |
B | HOH566 |
B | HOH567 |
B | HOH580 |
B | HOH597 |
B | HOH629 |
B | HOH676 |
B | HOH859 |
site_id | BC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL C 301 |
Chain | Residue |
B | GLY84 |
C | ARG50 |
C | GLN57 |
site_id | BC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL C 302 |
Chain | Residue |
C | TYR91 |
C | ASP96 |
C | ARG103 |
site_id | BC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL C 303 |
Chain | Residue |
C | GLU232 |
C | LEU244 |
C | ARG246 |
C | HOH519 |
C | HOH523 |
C | HOH529 |
site_id | BC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL C 304 |
Chain | Residue |
A | LYS297 |
C | HIS94 |
C | ARG130 |
site_id | BC5 |
Number of Residues | 32 |
Details | BINDING SITE FOR RESIDUE NAP C 305 |
Chain | Residue |
C | ARG35 |
C | ARG36 |
C | CYS67 |
C | VAL68 |
C | PRO69 |
C | THR70 |
C | ARG71 |
C | SER72 |
C | TYR76 |
C | SER90 |
C | ASP92 |
C | GLY120 |
C | TRP121 |
C | ASP122 |
C | PRO123 |
C | ASN253 |
C | THR257 |
C | HOH405 |
C | HOH431 |
C | HOH495 |
C | HOH518 |
C | HOH538 |
C | HOH638 |
C | HOH640 |
C | HOH654 |
C | HOH707 |
C | HOH809 |
C | GLY10 |
C | TYR11 |
C | GLY12 |
C | ASN13 |
C | VAL14 |