3WB9
Crystal Structures of meso-diaminopimelate dehydrogenase from Symbiobacterium thermophilum
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0009085 | biological_process | lysine biosynthetic process |
A | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0019877 | biological_process | diaminopimelate biosynthetic process |
A | 0047850 | molecular_function | diaminopimelate dehydrogenase activity |
B | 0000166 | molecular_function | nucleotide binding |
B | 0009085 | biological_process | lysine biosynthetic process |
B | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0019877 | biological_process | diaminopimelate biosynthetic process |
B | 0047850 | molecular_function | diaminopimelate dehydrogenase activity |
C | 0000166 | molecular_function | nucleotide binding |
C | 0009085 | biological_process | lysine biosynthetic process |
C | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0019877 | biological_process | diaminopimelate biosynthetic process |
C | 0047850 | molecular_function | diaminopimelate dehydrogenase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A 301 |
Chain | Residue |
A | SER90 |
A | GLY120 |
A | TRP121 |
A | ASP122 |
A | PRO123 |
A | ASN253 |
site_id | AC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE GOL A 302 |
Chain | Residue |
A | ALA79 |
A | THR202 |
site_id | AC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL A 303 |
Chain | Residue |
A | ASP99 |
A | LEU100 |
A | ARG103 |
A | TYR91 |
site_id | AC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL A 304 |
Chain | Residue |
A | GLU248 |
A | ARG250 |
C | LEU244 |
C | ARG246 |
site_id | AC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL B 301 |
Chain | Residue |
B | HIS94 |
B | ARG130 |
B | HOH481 |
site_id | AC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL B 302 |
Chain | Residue |
B | TYR91 |
B | ASP96 |
B | ASP99 |
B | LEU100 |
B | ARG103 |
B | HOH717 |
site_id | AC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE GOL B 303 |
Chain | Residue |
B | GLU248 |
B | ARG250 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL C 401 |
Chain | Residue |
C | ILE55 |
C | LEU58 |
C | GLY60 |
C | VAL61 |
C | ARG83 |
C | ILE85 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL C 402 |
Chain | Residue |
A | LEU244 |
A | ARG246 |
C | GLU248 |
C | ARG250 |
C | HOH581 |
site_id | BC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL C 403 |
Chain | Residue |
A | ARG50 |
A | SER56 |
A | GLN57 |
A | GLU59 |
A | HOH653 |
C | ARG83 |
C | GLY84 |
C | HOH608 |