3WB9
Crystal Structures of meso-diaminopimelate dehydrogenase from Symbiobacterium thermophilum
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0008652 | biological_process | amino acid biosynthetic process |
| A | 0009085 | biological_process | L-lysine biosynthetic process |
| A | 0009089 | biological_process | L-lysine biosynthetic process via diaminopimelate |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0019877 | biological_process | diaminopimelate biosynthetic process |
| A | 0047850 | molecular_function | diaminopimelate dehydrogenase activity |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0008652 | biological_process | amino acid biosynthetic process |
| B | 0009085 | biological_process | L-lysine biosynthetic process |
| B | 0009089 | biological_process | L-lysine biosynthetic process via diaminopimelate |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0019877 | biological_process | diaminopimelate biosynthetic process |
| B | 0047850 | molecular_function | diaminopimelate dehydrogenase activity |
| C | 0000166 | molecular_function | nucleotide binding |
| C | 0008652 | biological_process | amino acid biosynthetic process |
| C | 0009085 | biological_process | L-lysine biosynthetic process |
| C | 0009089 | biological_process | L-lysine biosynthetic process via diaminopimelate |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0019877 | biological_process | diaminopimelate biosynthetic process |
| C | 0047850 | molecular_function | diaminopimelate dehydrogenase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL A 301 |
| Chain | Residue |
| A | SER90 |
| A | GLY120 |
| A | TRP121 |
| A | ASP122 |
| A | PRO123 |
| A | ASN253 |
| site_id | AC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE GOL A 302 |
| Chain | Residue |
| A | ALA79 |
| A | THR202 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL A 303 |
| Chain | Residue |
| A | ASP99 |
| A | LEU100 |
| A | ARG103 |
| A | TYR91 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL A 304 |
| Chain | Residue |
| A | GLU248 |
| A | ARG250 |
| C | LEU244 |
| C | ARG246 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL B 301 |
| Chain | Residue |
| B | HIS94 |
| B | ARG130 |
| B | HOH481 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL B 302 |
| Chain | Residue |
| B | TYR91 |
| B | ASP96 |
| B | ASP99 |
| B | LEU100 |
| B | ARG103 |
| B | HOH717 |
| site_id | AC7 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE GOL B 303 |
| Chain | Residue |
| B | GLU248 |
| B | ARG250 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL C 401 |
| Chain | Residue |
| C | ILE55 |
| C | LEU58 |
| C | GLY60 |
| C | VAL61 |
| C | ARG83 |
| C | ILE85 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL C 402 |
| Chain | Residue |
| A | LEU244 |
| A | ARG246 |
| C | GLU248 |
| C | ARG250 |
| C | HOH581 |
| site_id | BC1 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL C 403 |
| Chain | Residue |
| A | ARG50 |
| A | SER56 |
| A | GLN57 |
| A | GLU59 |
| A | HOH653 |
| C | ARG83 |
| C | GLY84 |
| C | HOH608 |
