3WA2
High resolution crystal structure of copper amine oxidase from arthrobacter globiformis
Functional Information from GO Data
Chain | GOid | namespace | contents |
X | 0005507 | molecular_function | copper ion binding |
X | 0008131 | molecular_function | primary methylamine oxidase activity |
X | 0009308 | biological_process | amine metabolic process |
X | 0016491 | molecular_function | oxidoreductase activity |
X | 0016641 | molecular_function | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor |
X | 0046872 | molecular_function | metal ion binding |
X | 0048038 | molecular_function | quinone binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CU X 701 |
Chain | Residue |
X | HIS431 |
X | HIS433 |
X | HIS592 |
X | 1PE730 |
X | HOH1167 |
X | HOH1184 |
site_id | AC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE NA X 702 |
Chain | Residue |
X | ILE582 |
X | HOH819 |
X | ASP440 |
X | MET441 |
X | ASP581 |
site_id | AC3 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE EDO X 703 |
Chain | Residue |
X | TYR41 |
X | GLY43 |
X | VAL44 |
X | LEU45 |
X | ARG61 |
X | ARG551 |
X | TYR552 |
X | PEG722 |
X | HOH1238 |
site_id | AC4 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE EDO X 704 |
Chain | Residue |
X | HOH1548 |
site_id | AC5 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE EDO X 705 |
Chain | Residue |
X | TRP349 |
X | ILE351 |
X | ASN368 |
X | ASP393 |
X | VAL604 |
X | HOH923 |
X | HOH929 |
X | HOH1018 |
X | HOH1150 |
X | HOH1448 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO X 706 |
Chain | Residue |
X | PRO287 |
X | GLY463 |
X | GLU465 |
X | HOH1355 |
X | HOH1549 |
site_id | AC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO X 707 |
Chain | Residue |
X | ARG188 |
X | HOH1351 |
X | HOH1417 |
X | HOH1438 |
site_id | AC8 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO X 708 |
Chain | Residue |
X | THR29 |
X | ARG532 |
X | ALA535 |
X | GLY564 |
X | PRO568 |
X | HOH956 |
X | HOH1423 |
X | HOH1506 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO X 709 |
Chain | Residue |
X | GLN458 |
X | PRO462 |
X | GLY463 |
X | ASN464 |
X | HOH969 |
site_id | BC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO X 710 |
Chain | Residue |
X | ASN363 |
X | ARG366 |
X | PEG720 |
X | HOH1387 |
X | HOH1701 |
site_id | BC2 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE EDO X 711 |
Chain | Residue |
X | GLY43 |
X | VAL44 |
X | PHE249 |
X | ASP250 |
X | HOH850 |
X | HOH1292 |
X | HOH1477 |
X | HOH1486 |
X | HOH1704 |
site_id | BC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO X 712 |
Chain | Residue |
X | SER471 |
X | ARG472 |
X | HOH1226 |
X | HOH1504 |
X | HOH1518 |
X | HOH1609 |
site_id | BC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO X 713 |
Chain | Residue |
X | GLU413 |
X | GLY415 |
X | HOH1115 |
site_id | BC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO X 714 |
Chain | Residue |
X | ARG117 |
X | ARG188 |
X | VAL189 |
X | 1PE731 |
site_id | BC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE PEG X 715 |
Chain | Residue |
X | ARG472 |
X | HOH1426 |
X | HOH1428 |
X | HOH1434 |
X | HOH1516 |
site_id | BC7 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE PEG X 716 |
Chain | Residue |
X | ARG485 |
X | GLU486 |
X | ASP488 |
X | ARG493 |
X | HOH1155 |
X | HOH1485 |
X | HOH1563 |
X | HOH1602 |
site_id | BC8 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE PEG X 717 |
Chain | Residue |
X | HOH942 |
X | HOH1219 |
X | HOH1311 |
X | PHE195 |
X | PRO196 |
X | PRO412 |
X | GLU413 |
X | PGE726 |
X | HOH887 |
site_id | BC9 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE PEG X 718 |
Chain | Residue |
X | ALA135 |
X | TRP168 |
X | SER356 |
X | ASP357 |
X | LEU358 |
X | TRP359 |
X | THR378 |
X | GLY380 |
X | PGE724 |
X | PGE728 |
X | HOH1343 |
X | HOH1528 |
site_id | CC1 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE PEG X 719 |
Chain | Residue |
X | ARG13 |
X | LEU14 |
X | ALA15 |
X | SER16 |
X | GLU19 |
X | ARG71 |
X | ASP91 |
X | HOH914 |
X | HOH1005 |
X | HOH1580 |
X | HOH1591 |
site_id | CC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PEG X 720 |
Chain | Residue |
X | ALA627 |
X | EDO710 |
X | HOH1585 |
X | HOH1701 |
site_id | CC3 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE PEG X 721 |
Chain | Residue |
X | TRP349 |
X | TRP349 |
X | GLY350 |
X | ARG370 |
X | TYR389 |
X | GLU397 |
X | GLU399 |
X | LYS401 |
X | HOH889 |
X | HOH1534 |
X | HOH1584 |
X | HOH1695 |
site_id | CC4 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE PEG X 722 |
Chain | Residue |
X | ASP46 |
X | GLU253 |
X | ARG274 |
X | ASP548 |
X | ARG551 |
X | TYR552 |
X | EDO703 |
X | PEG723 |
X | HOH963 |
X | HOH1238 |
X | HOH1239 |
X | HOH1312 |
site_id | CC5 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE PEG X 723 |
Chain | Residue |
X | PRO47 |
X | ARG49 |
X | TYR546 |
X | ASP548 |
X | ARG551 |
X | PEG722 |
X | HOH963 |
X | HOH1622 |
site_id | CC6 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE PGE X 724 |
Chain | Residue |
X | VAL100 |
X | LEU101 |
X | GLU102 |
X | GLU104 |
X | PHE105 |
X | PRO136 |
X | TYR307 |
X | THR378 |
X | ILE379 |
X | GLY380 |
X | PEG718 |
X | PGE728 |
X | HOH1528 |
X | HOH1539 |
site_id | CC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE PGE X 725 |
Chain | Residue |
X | PRO424 |
X | ARG505 |
X | HOH1146 |
X | HOH1588 |
X | HOH1595 |
site_id | CC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PGE X 726 |
Chain | Residue |
X | THR192 |
X | VAL194 |
X | PHE195 |
X | PEG717 |
site_id | CC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE PGE X 727 |
Chain | Residue |
X | GLU208 |
X | GLY211 |
X | ARG619 |
site_id | DC1 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE PGE X 728 |
Chain | Residue |
X | ALA135 |
X | LEU137 |
X | TRP168 |
X | GLY380 |
X | ASN381 |
X | TPQ382 |
X | PHE407 |
X | PEG718 |
X | PGE724 |
X | HOH1407 |
site_id | DC2 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE PG4 X 729 |
Chain | Residue |
X | ASN126 |
X | ASP128 |
X | ASP161 |
X | HIS170 |
X | VAL197 |
X | ALA199 |
X | HOH1172 |
X | HOH1358 |
X | HOH1424 |
X | HOH1465 |
site_id | DC3 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE 1PE X 730 |
Chain | Residue |
X | ALA402 |
X | HIS433 |
X | LEU590 |
X | HIS592 |
X | PHE593 |
X | ARG595 |
X | ASP598 |
X | MET602 |
X | PRO603 |
X | ASP605 |
X | ARG612 |
X | CU701 |
X | HOH892 |
X | HOH1184 |
X | HOH1192 |
X | HOH1373 |
X | HOH1488 |
site_id | DC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE 1PE X 731 |
Chain | Residue |
X | VAL189 |
X | ASP191 |
X | THR192 |
X | EDO714 |
X | HOH1408 |
site_id | DC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE OXY X 732 |
Chain | Residue |
X | LEU156 |
X | ALA157 |
X | VAL172 |
X | LEU175 |
X | HOH840 |
site_id | DC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE OXY X 733 |
Chain | Residue |
X | GLU399 |
X | HIS517 |
X | THR606 |
X | VAL607 |
X | HOH827 |
X | HOH1033 |
X | HOH1531 |
site_id | DC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE OXY X 734 |
Chain | Residue |
X | ALA487 |
X | ARG490 |
X | HOH1263 |
X | HOH1265 |
X | HOH1540 |
site_id | DC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE OXY X 735 |
Chain | Residue |
X | THR521 |
X | LEU522 |
X | THR538 |
X | HOH904 |
X | HOH1218 |
Functional Information from PROSITE/UniProt
site_id | PS01164 |
Number of Residues | 14 |
Details | COPPER_AMINE_OXID_1 Copper amine oxidase topaquinone signature. MVIsfftTigNYDY |
Chain | Residue | Details |
X | MET371-TYR384 |
site_id | PS01165 |
Number of Residues | 14 |
Details | COPPER_AMINE_OXID_2 Copper amine oxidase copper-binding site signature. TfGltHFprvEDwP |
Chain | Residue | Details |
X | THR587-PRO600 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 1 |
Details | Active site: {"description":"Proton acceptor","evidences":[{"source":"UniProtKB","id":"P12807","evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI2 |
Number of Residues | 1 |
Details | Active site: {"description":"Schiff-base intermediate with substrate; via topaquinone","evidences":[{"source":"UniProtKB","id":"P12807","evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 11 |
Details | Binding site: {"evidences":[{"source":"UniProtKB","id":"P12807","evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 3 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"9405045","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1AV4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1AVL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1IU7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1IVU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1IVV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1IVW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1IVX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1RJO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1SIH","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1SII","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1UI8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1W4N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1W5Z","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1W6C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1W6G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BT3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CFD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CFG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CFK","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CFL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CFW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CG0","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CG1","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CWT","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CWU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CWV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2D1W","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2E2T","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2E2U","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2E2V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2YX9","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2ZL8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3AMO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3KII","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3KN4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3WA2","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3WA3","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI5 |
Number of Residues | 1 |
Details | Modified residue: {"description":"2',4',5'-topaquinone","evidences":[{"source":"PubMed","id":"9405045","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |