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3WA2

High resolution crystal structure of copper amine oxidase from arthrobacter globiformis

Functional Information from GO Data
ChainGOidnamespacecontents
X0005507molecular_functioncopper ion binding
X0008131molecular_functionprimary methylamine oxidase activity
X0009308biological_processamine metabolic process
X0016491molecular_functionoxidoreductase activity
X0016641molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor
X0046872molecular_functionmetal ion binding
X0048038molecular_functionquinone binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CU X 701
ChainResidue
XHIS431
XHIS433
XHIS592
X1PE730
XHOH1167
XHOH1184

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA X 702
ChainResidue
XILE582
XHOH819
XASP440
XMET441
XASP581

site_idAC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO X 703
ChainResidue
XTYR41
XGLY43
XVAL44
XLEU45
XARG61
XARG551
XTYR552
XPEG722
XHOH1238

site_idAC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO X 704
ChainResidue
XHOH1548

site_idAC5
Number of Residues10
DetailsBINDING SITE FOR RESIDUE EDO X 705
ChainResidue
XTRP349
XILE351
XASN368
XASP393
XVAL604
XHOH923
XHOH929
XHOH1018
XHOH1150
XHOH1448

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO X 706
ChainResidue
XPRO287
XGLY463
XGLU465
XHOH1355
XHOH1549

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO X 707
ChainResidue
XARG188
XHOH1351
XHOH1417
XHOH1438

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO X 708
ChainResidue
XTHR29
XARG532
XALA535
XGLY564
XPRO568
XHOH956
XHOH1423
XHOH1506

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO X 709
ChainResidue
XGLN458
XPRO462
XGLY463
XASN464
XHOH969

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO X 710
ChainResidue
XASN363
XARG366
XPEG720
XHOH1387
XHOH1701

site_idBC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO X 711
ChainResidue
XGLY43
XVAL44
XPHE249
XASP250
XHOH850
XHOH1292
XHOH1477
XHOH1486
XHOH1704

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO X 712
ChainResidue
XSER471
XARG472
XHOH1226
XHOH1504
XHOH1518
XHOH1609

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO X 713
ChainResidue
XGLU413
XGLY415
XHOH1115

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO X 714
ChainResidue
XARG117
XARG188
XVAL189
X1PE731

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PEG X 715
ChainResidue
XARG472
XHOH1426
XHOH1428
XHOH1434
XHOH1516

site_idBC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PEG X 716
ChainResidue
XARG485
XGLU486
XASP488
XARG493
XHOH1155
XHOH1485
XHOH1563
XHOH1602

site_idBC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PEG X 717
ChainResidue
XHOH942
XHOH1219
XHOH1311
XPHE195
XPRO196
XPRO412
XGLU413
XPGE726
XHOH887

site_idBC9
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PEG X 718
ChainResidue
XALA135
XTRP168
XSER356
XASP357
XLEU358
XTRP359
XTHR378
XGLY380
XPGE724
XPGE728
XHOH1343
XHOH1528

site_idCC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PEG X 719
ChainResidue
XARG13
XLEU14
XALA15
XSER16
XGLU19
XARG71
XASP91
XHOH914
XHOH1005
XHOH1580
XHOH1591

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PEG X 720
ChainResidue
XALA627
XEDO710
XHOH1585
XHOH1701

site_idCC3
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PEG X 721
ChainResidue
XTRP349
XTRP349
XGLY350
XARG370
XTYR389
XGLU397
XGLU399
XLYS401
XHOH889
XHOH1534
XHOH1584
XHOH1695

site_idCC4
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PEG X 722
ChainResidue
XASP46
XGLU253
XARG274
XASP548
XARG551
XTYR552
XEDO703
XPEG723
XHOH963
XHOH1238
XHOH1239
XHOH1312

site_idCC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PEG X 723
ChainResidue
XPRO47
XARG49
XTYR546
XASP548
XARG551
XPEG722
XHOH963
XHOH1622

site_idCC6
Number of Residues14
DetailsBINDING SITE FOR RESIDUE PGE X 724
ChainResidue
XVAL100
XLEU101
XGLU102
XGLU104
XPHE105
XPRO136
XTYR307
XTHR378
XILE379
XGLY380
XPEG718
XPGE728
XHOH1528
XHOH1539

site_idCC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PGE X 725
ChainResidue
XPRO424
XARG505
XHOH1146
XHOH1588
XHOH1595

site_idCC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGE X 726
ChainResidue
XTHR192
XVAL194
XPHE195
XPEG717

site_idCC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PGE X 727
ChainResidue
XGLU208
XGLY211
XARG619

site_idDC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PGE X 728
ChainResidue
XALA135
XLEU137
XTRP168
XGLY380
XASN381
XTPQ382
XPHE407
XPEG718
XPGE724
XHOH1407

site_idDC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PG4 X 729
ChainResidue
XASN126
XASP128
XASP161
XHIS170
XVAL197
XALA199
XHOH1172
XHOH1358
XHOH1424
XHOH1465

site_idDC3
Number of Residues17
DetailsBINDING SITE FOR RESIDUE 1PE X 730
ChainResidue
XALA402
XHIS433
XLEU590
XHIS592
XPHE593
XARG595
XASP598
XMET602
XPRO603
XASP605
XARG612
XCU701
XHOH892
XHOH1184
XHOH1192
XHOH1373
XHOH1488

site_idDC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE 1PE X 731
ChainResidue
XVAL189
XASP191
XTHR192
XEDO714
XHOH1408

site_idDC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE OXY X 732
ChainResidue
XLEU156
XALA157
XVAL172
XLEU175
XHOH840

site_idDC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE OXY X 733
ChainResidue
XGLU399
XHIS517
XTHR606
XVAL607
XHOH827
XHOH1033
XHOH1531

site_idDC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE OXY X 734
ChainResidue
XALA487
XARG490
XHOH1263
XHOH1265
XHOH1540

site_idDC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE OXY X 735
ChainResidue
XTHR521
XLEU522
XTHR538
XHOH904
XHOH1218

Functional Information from PROSITE/UniProt
site_idPS01164
Number of Residues14
DetailsCOPPER_AMINE_OXID_1 Copper amine oxidase topaquinone signature. MVIsfftTigNYDY
ChainResidueDetails
XMET371-TYR384

site_idPS01165
Number of Residues14
DetailsCOPPER_AMINE_OXID_2 Copper amine oxidase copper-binding site signature. TfGltHFprvEDwP
ChainResidueDetails
XTHR587-PRO600

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"UniProtKB","id":"P12807","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsActive site: {"description":"Schiff-base intermediate with substrate; via topaquinone","evidences":[{"source":"UniProtKB","id":"P12807","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues11
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"P12807","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"9405045","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1AV4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1AVL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1IU7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1IVU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1IVV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1IVW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1IVX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1RJO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1SIH","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1SII","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1UI8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1W4N","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1W5Z","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1W6C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1W6G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BT3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CFD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CFG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CFK","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CFL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CFW","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CG0","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CG1","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CWT","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CWU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2CWV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2D1W","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2E2T","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2E2U","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2E2V","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2YX9","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2ZL8","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3AMO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3KII","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3KN4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3WA2","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3WA3","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsModified residue: {"description":"2',4',5'-topaquinone","evidences":[{"source":"PubMed","id":"9405045","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

239149

PDB entries from 2025-07-23

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