3W7P
Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with TT2-4-031
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004152 | molecular_function | dihydroorotate dehydrogenase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0006207 | biological_process | 'de novo' pyrimidine nucleobase biosynthetic process |
A | 0006221 | biological_process | pyrimidine nucleotide biosynthetic process |
A | 0006222 | biological_process | UMP biosynthetic process |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
A | 0044205 | biological_process | 'de novo' UMP biosynthetic process |
A | 1990663 | molecular_function | dihydroorotate dehydrogenase (fumarate) activity |
B | 0004152 | molecular_function | dihydroorotate dehydrogenase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0006207 | biological_process | 'de novo' pyrimidine nucleobase biosynthetic process |
B | 0006221 | biological_process | pyrimidine nucleotide biosynthetic process |
B | 0006222 | biological_process | UMP biosynthetic process |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
B | 0044205 | biological_process | 'de novo' UMP biosynthetic process |
B | 1990663 | molecular_function | dihydroorotate dehydrogenase (fumarate) activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE W7P A 401 |
Chain | Residue |
A | LYS43 |
A | PRO131 |
A | ASN194 |
A | SER195 |
A | LYS214 |
A | GOL409 |
A | FMN416 |
A | HOH764 |
A | HOH795 |
A | HOH796 |
A | ASN53 |
A | ASN67 |
A | MET69 |
A | GLY70 |
A | LEU71 |
A | ASN127 |
A | SER129 |
A | CYS130 |
site_id | AC2 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE GOL A 402 |
Chain | Residue |
A | CYS31 |
A | ALA34 |
A | SER35 |
A | PRO279 |
A | HOH531 |
B | CYS31 |
B | ALA34 |
B | SER35 |
B | HOH656 |
site_id | AC3 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL A 403 |
Chain | Residue |
A | ILE171 |
A | ARG239 |
A | HOH596 |
A | HOH757 |
B | LYS214 |
B | PHE217 |
B | GOL414 |
B | HOH834 |
site_id | AC4 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL A 404 |
Chain | Residue |
A | LYS214 |
A | PHE217 |
A | GOL411 |
A | HOH554 |
A | HOH588 |
A | HOH791 |
B | ILE171 |
B | ARG239 |
site_id | AC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL A 405 |
Chain | Residue |
A | TYR237 |
A | PRO241 |
A | GOL407 |
A | HOH572 |
A | HOH670 |
site_id | AC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL A 406 |
Chain | Residue |
A | TYR58 |
A | MET69 |
A | HOH539 |
A | HOH623 |
site_id | AC7 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL A 407 |
Chain | Residue |
A | ARG238 |
A | GOL405 |
A | HOH670 |
A | HOH671 |
B | GLU104 |
B | GOL414 |
B | HOH758 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A 408 |
Chain | Residue |
A | PHE61 |
A | ILE202 |
A | ASP203 |
A | HOH578 |
A | HOH665 |
A | HOH681 |
site_id | AC9 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE GOL A 409 |
Chain | Residue |
A | SER129 |
A | PRO166 |
A | ASN194 |
A | SER195 |
A | GLY197 |
A | GLY219 |
A | W7P401 |
A | HOH529 |
A | HOH764 |
A | HOH793 |
site_id | BC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL A 410 |
Chain | Residue |
A | SER206 |
A | SER208 |
A | VAL209 |
A | VAL210 |
A | HOH576 |
A | HOH681 |
B | ILE311 |
site_id | BC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL A 411 |
Chain | Residue |
A | GLN215 |
A | GOL404 |
A | HOH812 |
A | HOH832 |
B | ARG238 |
site_id | BC3 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE GOL A 412 |
Chain | Residue |
A | VAL10 |
A | TYR89 |
A | SER90 |
A | LYS91 |
A | PRO93 |
A | HOH550 |
A | HOH573 |
A | HOH654 |
A | HOH706 |
site_id | BC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL A 413 |
Chain | Residue |
B | GLU27 |
A | GLU277 |
A | ARG284 |
A | HOH676 |
site_id | BC5 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL A 414 |
Chain | Residue |
A | HIS9 |
A | ALA117 |
A | GLN118 |
A | GLY121 |
A | GOL415 |
A | HOH580 |
A | HOH741 |
site_id | BC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A 415 |
Chain | Residue |
A | GLN118 |
A | GLU119 |
A | GLY121 |
A | GOL414 |
A | HOH718 |
A | HOH882 |
site_id | BC7 |
Number of Residues | 23 |
Details | BINDING SITE FOR RESIDUE FMN A 416 |
Chain | Residue |
A | ALA18 |
A | ALA19 |
A | GLY20 |
A | LYS43 |
A | SER44 |
A | ASN67 |
A | ASN127 |
A | LYS164 |
A | VAL193 |
A | ASN194 |
A | GLY221 |
A | GLY222 |
A | ILE225 |
A | CYS248 |
A | GLY249 |
A | GLY250 |
A | GLY271 |
A | THR272 |
A | W7P401 |
A | HOH509 |
A | HOH517 |
A | HOH527 |
A | HOH758 |
site_id | BC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE NCO A 417 |
Chain | Residue |
A | GLN275 |
A | GLU276 |
A | GLY278 |
A | HOH728 |
B | GLN275 |
B | GLU276 |
B | GLY278 |
site_id | BC9 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE W7P B 401 |
Chain | Residue |
B | LYS43 |
B | ASN67 |
B | MET69 |
B | GLY70 |
B | LEU71 |
B | ASN127 |
B | SER129 |
B | ASN194 |
B | SER195 |
B | LYS214 |
B | GOL402 |
B | FMN415 |
B | HOH745 |
B | HOH764 |
B | HOH791 |
site_id | CC1 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE GOL B 402 |
Chain | Residue |
B | SER129 |
B | GLN138 |
B | PRO166 |
B | ASN194 |
B | SER195 |
B | W7P401 |
B | HOH514 |
B | HOH519 |
B | HOH745 |
site_id | CC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL B 403 |
Chain | Residue |
B | TYR237 |
B | PRO241 |
B | GOL413 |
site_id | CC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL B 404 |
Chain | Residue |
B | ASN182 |
B | HOH579 |
B | HOH742 |
site_id | CC4 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE GOL B 405 |
Chain | Residue |
B | HIS9 |
B | TYR89 |
B | LYS92 |
B | PRO93 |
B | LYS120 |
B | GLY121 |
B | GOL409 |
B | HOH510 |
B | HOH697 |
site_id | CC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL B 406 |
Chain | Residue |
B | PHE61 |
B | ASP203 |
B | HOH604 |
B | HOH682 |
B | HOH685 |
site_id | CC6 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL B 407 |
Chain | Residue |
A | ILE311 |
B | ASP203 |
B | SER206 |
B | SER208 |
B | VAL209 |
B | VAL210 |
B | HOH625 |
B | HOH682 |
site_id | CC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE GOL B 408 |
Chain | Residue |
B | TYR58 |
B | HOH676 |
site_id | CC8 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE GOL B 409 |
Chain | Residue |
A | GLU302 |
A | HOH864 |
B | HIS9 |
B | VAL10 |
B | TYR89 |
B | LYS92 |
B | PRO93 |
B | GOL405 |
B | HOH512 |
B | HOH759 |
site_id | CC9 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL B 410 |
Chain | Residue |
A | GLU312 |
B | PRO54 |
B | LYS212 |
B | PRO213 |
B | LYS214 |
B | HOH753 |
B | HOH794 |
site_id | DC1 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE GOL B 411 |
Chain | Residue |
A | ASN5 |
A | VAL10 |
B | LEU4 |
B | ASN5 |
B | LEU6 |
B | GLU302 |
B | ARG305 |
B | HOH637 |
B | HOH773 |
B | HOH796 |
B | HOH798 |
site_id | DC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL B 412 |
Chain | Residue |
B | PHE78 |
B | LYS81 |
B | HOH621 |
B | HOH709 |
site_id | DC3 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE GOL B 413 |
Chain | Residue |
A | ASP8 |
B | GOL403 |
site_id | DC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL B 414 |
Chain | Residue |
A | ARG238 |
A | ARG239 |
A | GOL403 |
A | GOL407 |
B | VAL107 |
B | ARG111 |
B | GLN215 |
site_id | DC5 |
Number of Residues | 23 |
Details | BINDING SITE FOR RESIDUE FMN B 415 |
Chain | Residue |
B | ALA18 |
B | ALA19 |
B | GLY20 |
B | LYS43 |
B | SER44 |
B | ASN67 |
B | ASN127 |
B | LYS164 |
B | VAL193 |
B | ASN194 |
B | GLY221 |
B | GLY222 |
B | ILE225 |
B | CYS248 |
B | GLY249 |
B | GLY250 |
B | GLY271 |
B | THR272 |
B | W7P401 |
B | HOH505 |
B | HOH516 |
B | HOH522 |
B | HOH743 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Nucleophile => ECO:0000250 |
Chain | Residue | Details |
A | CYS130 | |
B | CYS130 |
site_id | SWS_FT_FI2 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000269|PubMed:18302934 |
Chain | Residue | Details |
A | VAL193 | |
A | GLY222 | |
A | GLY249 | |
A | GLY271 | |
B | ALA19 | |
B | LYS164 | |
B | VAL193 | |
B | GLY222 | |
B | GLY249 | |
B | GLY271 | |
A | ALA19 | |
A | LYS164 |
site_id | SWS_FT_FI3 |
Number of Residues | 10 |
Details | BINDING: |
Chain | Residue | Details |
A | ASN194 | |
B | LYS43 | |
B | ASN67 | |
B | ASN127 | |
B | ASN132 | |
B | ASN194 | |
A | LYS43 | |
A | ASN67 | |
A | ASN127 | |
A | ASN132 |