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3W6N

Crystal structure of human Dlp1 in complex with GMP-PN.Pi

Functional Information from GO Data
ChainGOidnamespacecontents
A0003924molecular_functionGTPase activity
A0005525molecular_functionGTP binding
B0003924molecular_functionGTPase activity
B0005525molecular_functionGTP binding
Functional Information from PDB Data
site_idAC1
Number of Residues25
DetailsBINDING SITE FOR RESIDUE GNH A 801
ChainResidue
ASER35
AASP218
ALEU219
AVAL245
AASN246
AARG247
ASER248
AGLN249
AILE252
APO4802
AMG803
ASER36
AHOH903
AHOH904
AHOH905
AHOH922
BASP221
BHOH904
AGLY37
ALYS38
ASER39
ASER40
AARG53
AGLY54
ALYS216

site_idAC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE PO4 A 802
ChainResidue
AGLN34
ASER35
ALYS38
AGLY56
AVAL58
ATHR59
APRO148
AGLY149
AGNH801
AMG803
AHOH904
AHOH922
AHOH960

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 803
ChainResidue
ASER39
ATHR59
AGNH801
APO4802
AHOH904
AHOH905

site_idAC4
Number of Residues25
DetailsBINDING SITE FOR RESIDUE GNH B 801
ChainResidue
AASP221
AHOH1091
BSER35
BSER36
BGLY37
BLYS38
BSER39
BSER40
BARG53
BGLY54
BLYS216
BASP218
BLEU219
BVAL245
BASN246
BARG247
BSER248
BGLN249
BILE252
BPO4802
BMG803
BHOH933
BHOH934
BHOH951
BHOH1070

site_idAC5
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PO4 B 802
ChainResidue
BGLN34
BSER35
BLYS38
BGLY56
BVAL58
BTHR59
BGLY149
BGNH801
BMG803
BHOH934
BHOH1070

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 803
ChainResidue
BSER39
BTHR59
BGNH801
BPO4802
BHOH934
BHOH951

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA B 804
ChainResidue
BHOH1145
BHOH1146
BHOH1147
BHOH1148
BHOH1149
BHOH1150
BHOH1151

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PG4 B 805
ChainResidue
ALEU219
AMET220
BLEU219
BMET220
BHOH903

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PG4 B 806
ChainResidue
AASP206
BASN176
BHOH924
APRO205

Functional Information from PROSITE/UniProt
site_idPS00410
Number of Residues10
DetailsG_DYNAMIN_1 Dynamin-type guanine nucleotide-binding (G) domain signature. LPRGTGIVTR
ChainResidueDetails
ALEU51-ARG60

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues14
DetailsRegion: {"description":"G1 motif","evidences":[{"source":"PROSITE-ProRule","id":"PRU01055","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsRegion: {"description":"G2 motif","evidences":[{"source":"PROSITE-ProRule","id":"PRU01055","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues6
DetailsRegion: {"description":"G3 motif","evidences":[{"source":"PROSITE-ProRule","id":"PRU01055","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues6
DetailsRegion: {"description":"G4 motif","evidences":[{"source":"PROSITE-ProRule","id":"PRU01055","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues6
DetailsRegion: {"description":"G5 motif","evidences":[{"source":"PROSITE-ProRule","id":"PRU01055","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues34
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"23977156","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues2
DetailsModified residue: {"description":"N-acetylmethionine","evidences":[{"source":"PubMed","id":"19413330","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"22223895","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

242842

PDB entries from 2025-10-08

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