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3VV6

Crystal Structure of beta secetase in complex with 2-amino-3-methyl-6-((1S, 2R)-2-phenylcyclopropyl)pyrimidin-4(3H)-one

Functional Information from GO Data
ChainGOidnamespacecontents
A0004190molecular_functionaspartic-type endopeptidase activity
A0006508biological_processproteolysis
A0016020cellular_componentmembrane
Functional Information from PDB Data
site_idAC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE IOD A 501
ChainResidue
ASER105

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE IOD A 502
ChainResidue
AARG349
AHOH1203

site_idAC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE IOD A 503
ChainResidue
ALYS107

site_idAC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE IOD A 504
ChainResidue
ALYS238

site_idAC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE IOD A 505
ChainResidue
AARG96

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 506
ChainResidue
ASER187
AHOH1089
AARG50
ATYR51
AGLN53

site_idAC7
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 507
ChainResidue
ASER10
AGLY11
AGLY13
ATYR14
AVAL170
ATHR231
ATHR232
AALA335
AGLU339
AHOH1166

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 508
ChainResidue
ALEU56
AHIS181
ATYR184
ATHR185
AGLY186
AHOH1149

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 509
ChainResidue
AGLY11
ATHR232
AASN233
AARG307
ALYS321

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE B00 A 510
ChainResidue
AASP32
ATYR71
APHE108
AILE118
AASP228
AGLY230
ATHR231

Functional Information from PROSITE/UniProt
site_idPS00141
Number of Residues12
DetailsASP_PROTEASE Eukaryotic and viral aspartyl proteases active site. ILVDTGSSNFAV
ChainResidueDetails
AILE29-VAL40

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU10094","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues7
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"17425515","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19011241","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues3
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

243083

PDB entries from 2025-10-15

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