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3VFL

Structure, Function, Stability and Knockout Phenotype of Dihydrodipicolinate Synthase from Streptococcus pneumoniae

Replaces:  3H5D
Functional Information from GO Data
ChainGOidnamespacecontents
A0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
A0009089biological_processlysine biosynthetic process via diaminopimelate
A0016829molecular_functionlyase activity
B0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
B0009089biological_processlysine biosynthetic process via diaminopimelate
B0016829molecular_functionlyase activity
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE K A 401
ChainResidue
AALA159
AHIS161
AILE164

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE K A 402
ChainResidue
ASER54
ALEU57
AGLU62

site_idAC3
Number of Residues12
DetailsBINDING SITE FOR RESIDUE GOL A 403
ChainResidue
ATHR50
ATHR51
ATYR140
ALYS168
AILE209
AGOL404
AMES406
AHOH619
BTYR114
AALA14
ALEU46
AGLY49

site_idAC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 404
ChainResidue
AALA48
AGLY49
ATHR50
ASER54
AGLY84
ALEU108
AALA109
AILE110
AGOL403
BTYR114

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 405
ChainResidue
ATHR56
AARG273
ALEU274
ALEU307
AARG308
BASP87
BTHR88
BARG89

site_idAC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE MES A 406
ChainResidue
ATYR140
AILE142
AARG145
AGLY192
AGLU193
APHE250
AGOL403
AHOH606
AHOH619

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE K B 401
ChainResidue
BALA159
BHIS161
BILE164

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE K B 402
ChainResidue
BSER54
BLEU57
BGLU62
BHOH572

site_idAC9
Number of Residues12
DetailsBINDING SITE FOR RESIDUE GOL B 403
ChainResidue
ATYR114
BALA14
BLEU46
BGLY49
BTHR50
BTHR51
BLEU108
BTYR140
BLYS168
BMES404
BHOH528
BHOH542

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MES B 404
ChainResidue
BTHR51
BTYR140
BARG145
BGLU193
BPHE250
BGOL403
BHOH566
BHOH604

Functional Information from PROSITE/UniProt
site_idPS00666
Number of Residues31
DetailsDHDPS_2 Dihydrodipicolinate synthase signature 2. YNIPgrVvveLtpetmlrladhpn.IiGVKEC
ChainResidueDetails
ATYR140-CYS170

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PDB entries from 2024-07-24

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