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3VEN

Crystal structure of the O-carbamoyltransferase TobZ

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003824molecular_functioncatalytic activity
A0005506molecular_functioniron ion binding
A0005524molecular_functionATP binding
A0009058biological_processbiosynthetic process
A0016138biological_processglycoside biosynthetic process
A0016743molecular_functioncarboxyl- or carbamoyltransferase activity
A0016787molecular_functionhydrolase activity
A0016874molecular_functionligase activity
A0017000biological_processantibiotic biosynthetic process
A0046872molecular_functionmetal ion binding
A1901121biological_processtobramycin biosynthetic process
A1901133biological_processkanamycin biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K A 601
ChainResidue
ATHR565
ALYS566
AASP567
AARG569
AHOH728

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE K A 602
ChainResidue
ALEU322
ATHR323
AARG324
AVAL327

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE K A 603
ChainResidue
AGLU242
AARG243
ATYR245
AHOH1383

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FE2 A 604
ChainResidue
AHIS114
AHIS118
AASP137
AASP338
AHOH1214

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 605
ChainResidue
AARG435
APRO450
APHE451
APRO488
ASER489
AVAL490
AVAL491
AHIS492
AHOH1273

site_idAC6
Number of Residues14
DetailsBINDING SITE FOR RESIDUE TLA A 606
ChainResidue
AARG418
AARG445
AARG449
APRO450
APHE451
AARG498
ATHR529
AHOH713
AHOH925
AHOH944
AHOH1052
AHOH1090
AHOH1269
AHOH1292

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues353
DetailsRegion: {"description":"Kae1-like"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues203
DetailsRegion: {"description":"YrdC-like"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PubMed","id":"22383337","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues11
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"22383337","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3VET","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"22383337","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3VEZ","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"22383337","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3VEX","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246333

PDB entries from 2025-12-17

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