3VCD
Computationally Designed Self-assembling Octahedral Cage protein, O333, Crystallized in space group R32
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0031469 | cellular_component | bacterial microcompartment |
| A | 0031472 | cellular_component | propanediol degradation polyhedral organelle |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0051144 | biological_process | 1,2-propanediol catabolic process |
| A | 0051536 | molecular_function | iron-sulfur cluster binding |
| A | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| B | 0031469 | cellular_component | bacterial microcompartment |
| B | 0031472 | cellular_component | propanediol degradation polyhedral organelle |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0051144 | biological_process | 1,2-propanediol catabolic process |
| B | 0051536 | molecular_function | iron-sulfur cluster binding |
| B | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| C | 0031469 | cellular_component | bacterial microcompartment |
| C | 0031472 | cellular_component | propanediol degradation polyhedral organelle |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0051144 | biological_process | 1,2-propanediol catabolic process |
| C | 0051536 | molecular_function | iron-sulfur cluster binding |
| C | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| D | 0031469 | cellular_component | bacterial microcompartment |
| D | 0031472 | cellular_component | propanediol degradation polyhedral organelle |
| D | 0046872 | molecular_function | metal ion binding |
| D | 0051144 | biological_process | 1,2-propanediol catabolic process |
| D | 0051536 | molecular_function | iron-sulfur cluster binding |
| D | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| E | 0031469 | cellular_component | bacterial microcompartment |
| E | 0031472 | cellular_component | propanediol degradation polyhedral organelle |
| E | 0046872 | molecular_function | metal ion binding |
| E | 0051144 | biological_process | 1,2-propanediol catabolic process |
| E | 0051536 | molecular_function | iron-sulfur cluster binding |
| E | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| F | 0031469 | cellular_component | bacterial microcompartment |
| F | 0031472 | cellular_component | propanediol degradation polyhedral organelle |
| F | 0046872 | molecular_function | metal ion binding |
| F | 0051144 | biological_process | 1,2-propanediol catabolic process |
| F | 0051536 | molecular_function | iron-sulfur cluster binding |
| F | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| G | 0031469 | cellular_component | bacterial microcompartment |
| G | 0031472 | cellular_component | propanediol degradation polyhedral organelle |
| G | 0046872 | molecular_function | metal ion binding |
| G | 0051144 | biological_process | 1,2-propanediol catabolic process |
| G | 0051536 | molecular_function | iron-sulfur cluster binding |
| G | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
| H | 0031469 | cellular_component | bacterial microcompartment |
| H | 0031472 | cellular_component | propanediol degradation polyhedral organelle |
| H | 0046872 | molecular_function | metal ion binding |
| H | 0051144 | biological_process | 1,2-propanediol catabolic process |
| H | 0051536 | molecular_function | iron-sulfur cluster binding |
| H | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 A 201 |
| Chain | Residue |
| A | THR36 |
| A | PHE42 |
| B | GLN180 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 A 202 |
| Chain | Residue |
| A | GLU9 |
| A | LYS41 |
| A | GLY131 |
| A | ILE132 |
| A | GLY133 |
| A | GLY134 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 B 201 |
| Chain | Residue |
| B | LYS35 |
| B | THR36 |
| C | GLN180 |
| C | GLY184 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 B 202 |
| Chain | Residue |
| B | GLU9 |
| B | LYS41 |
| B | GLY131 |
| B | GLY133 |
| B | GLY134 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 B 203 |
| Chain | Residue |
| B | ASP143 |
| B | VAL144 |
| B | HOH305 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 C 201 |
| Chain | Residue |
| A | TYR137 |
| A | GLN180 |
| A | GLY184 |
| C | LYS35 |
| C | THR36 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 C 202 |
| Chain | Residue |
| C | GLU9 |
| C | LYS41 |
| C | GLY131 |
| C | ILE132 |
| C | GLY133 |
| C | GLY134 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 C 203 |
| Chain | Residue |
| C | ASP143 |
| C | VAL144 |
| C | HOH335 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 D 201 |
| Chain | Residue |
| D | LYS35 |
| D | THR36 |
| D | HOH349 |
| E | GLN180 |
| E | HOH337 |
| site_id | BC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 D 202 |
| Chain | Residue |
| C | LYS93 |
| D | ARG172 |
| F | LYS25 |
| F | HOH301 |
| site_id | BC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE SO4 D 203 |
| Chain | Residue |
| D | GLU9 |
| D | LYS41 |
| D | GLY131 |
| D | ILE132 |
| D | GLY133 |
| D | GLY134 |
| D | HOH308 |
| site_id | BC3 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 D 204 |
| Chain | Residue |
| D | HIS78 |
| D | HOH310 |
| site_id | BC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 D 205 |
| Chain | Residue |
| D | VAL91 |
| D | ASP92 |
| D | LYS93 |
| site_id | BC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 E 201 |
| Chain | Residue |
| D | LYS25 |
| D | LYS25 |
| E | ARG172 |
| E | HOH303 |
| site_id | BC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 E 202 |
| Chain | Residue |
| E | ARG172 |
| E | HIS174 |
| E | HOH301 |
| E | HOH333 |
| site_id | BC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 E 203 |
| Chain | Residue |
| E | MET17 |
| E | LYS35 |
| E | THR36 |
| F | TYR137 |
| F | GLN180 |
| site_id | BC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 E 204 |
| Chain | Residue |
| E | GLU9 |
| E | LYS41 |
| E | GLY131 |
| E | ILE132 |
| E | GLY133 |
| E | GLY134 |
| site_id | BC9 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE SO4 F 201 |
| Chain | Residue |
| D | ARG94 |
| D | GLU175 |
| F | ASP143 |
| F | VAL144 |
| F | SER145 |
| F | HOH302 |
| F | HOH305 |
| F | HOH329 |
| site_id | CC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 F 202 |
| Chain | Residue |
| D | TYR137 |
| D | GLN180 |
| F | MET17 |
| F | THR36 |
| F | PHE42 |
| F | HOH319 |
| site_id | CC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 F 203 |
| Chain | Residue |
| F | GLU9 |
| F | LYS41 |
| F | GLY131 |
| F | ILE132 |
| F | GLY133 |
| F | GLY134 |
| site_id | CC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 G 201 |
| Chain | Residue |
| G | LYS35 |
| G | THR36 |
| G | GLN180 |
| G | HOH322 |
| site_id | CC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE SO4 G 202 |
| Chain | Residue |
| G | GLU9 |
| G | ILE37 |
| G | LYS41 |
| G | GLY131 |
| G | ILE132 |
| G | GLY133 |
| G | GLY134 |
| site_id | CC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 H 201 |
| Chain | Residue |
| H | LYS35 |
| H | THR36 |
| H | PHE42 |
| H | TYR137 |
| H | GLN180 |
| H | HOH343 |
| site_id | CC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 H 202 |
| Chain | Residue |
| B | SER26 |
| B | GLN55 |
| H | LYS93 |
| H | ARG94 |
| H | ARG172 |
| H | HOH336 |
| site_id | CC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 H 203 |
| Chain | Residue |
| H | GLU9 |
| H | LYS41 |
| H | GLY131 |
| H | ILE132 |
| H | GLY133 |
| H | HOH357 |
| site_id | CC8 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 H 204 |
| Chain | Residue |
| H | ASP92 |
| H | LYS93 |
| H | GLN95 |
| site_id | CC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL H 205 |
| Chain | Residue |
| H | ARG94 |
| H | ARG172 |
| H | HOH337 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 8 |
| Details | BINDING: BINDING => ECO:0000305|PubMed:20870711 |
| Chain | Residue | Details |
| A | SER38 | |
| B | SER38 | |
| C | SER38 | |
| D | SER38 | |
| E | SER38 | |
| F | SER38 | |
| G | SER38 | |
| H | SER38 |
