Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

3VCD

Computationally Designed Self-assembling Octahedral Cage protein, O333, Crystallized in space group R32

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0031469	cellular_component	bacterial microcompartment
A	0031472	cellular_component	propanediol degradation polyhedral organelle
A	0046872	molecular_function	metal ion binding
A	0051144	biological_process	1,2-propanediol catabolic process
A	0051536	molecular_function	iron-sulfur cluster binding
A	0051539	molecular_function	4 iron, 4 sulfur cluster binding
B	0031469	cellular_component	bacterial microcompartment
B	0031472	cellular_component	propanediol degradation polyhedral organelle
B	0046872	molecular_function	metal ion binding
B	0051144	biological_process	1,2-propanediol catabolic process
B	0051536	molecular_function	iron-sulfur cluster binding
B	0051539	molecular_function	4 iron, 4 sulfur cluster binding
C	0031469	cellular_component	bacterial microcompartment
C	0031472	cellular_component	propanediol degradation polyhedral organelle
C	0046872	molecular_function	metal ion binding
C	0051144	biological_process	1,2-propanediol catabolic process
C	0051536	molecular_function	iron-sulfur cluster binding
C	0051539	molecular_function	4 iron, 4 sulfur cluster binding
D	0031469	cellular_component	bacterial microcompartment
D	0031472	cellular_component	propanediol degradation polyhedral organelle
D	0046872	molecular_function	metal ion binding
D	0051144	biological_process	1,2-propanediol catabolic process
D	0051536	molecular_function	iron-sulfur cluster binding
D	0051539	molecular_function	4 iron, 4 sulfur cluster binding
E	0031469	cellular_component	bacterial microcompartment
E	0031472	cellular_component	propanediol degradation polyhedral organelle
E	0046872	molecular_function	metal ion binding
E	0051144	biological_process	1,2-propanediol catabolic process
E	0051536	molecular_function	iron-sulfur cluster binding
E	0051539	molecular_function	4 iron, 4 sulfur cluster binding
F	0031469	cellular_component	bacterial microcompartment
F	0031472	cellular_component	propanediol degradation polyhedral organelle
F	0046872	molecular_function	metal ion binding
F	0051144	biological_process	1,2-propanediol catabolic process
F	0051536	molecular_function	iron-sulfur cluster binding
F	0051539	molecular_function	4 iron, 4 sulfur cluster binding
G	0031469	cellular_component	bacterial microcompartment
G	0031472	cellular_component	propanediol degradation polyhedral organelle
G	0046872	molecular_function	metal ion binding
G	0051144	biological_process	1,2-propanediol catabolic process
G	0051536	molecular_function	iron-sulfur cluster binding
G	0051539	molecular_function	4 iron, 4 sulfur cluster binding
H	0031469	cellular_component	bacterial microcompartment
H	0031472	cellular_component	propanediol degradation polyhedral organelle
H	0046872	molecular_function	metal ion binding
H	0051144	biological_process	1,2-propanediol catabolic process
H	0051536	molecular_function	iron-sulfur cluster binding
H	0051539	molecular_function	4 iron, 4 sulfur cluster binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 A 201

Chain	Residue
A	THR36
A	PHE42
B	GLN180

site_id	AC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 A 202

Chain	Residue
A	GLU9
A	LYS41
A	GLY131
A	ILE132
A	GLY133
A	GLY134

site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SO4 B 201

Chain	Residue
B	LYS35
B	THR36
C	GLN180
C	GLY184

site_id	AC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SO4 B 202

Chain	Residue
B	GLU9
B	LYS41
B	GLY131
B	GLY133
B	GLY134

site_id	AC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 B 203

Chain	Residue
B	ASP143
B	VAL144
B	HOH305

site_id	AC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SO4 C 201

Chain	Residue
A	TYR137
A	GLN180
A	GLY184
C	LYS35
C	THR36

site_id	AC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 C 202

Chain	Residue
C	GLU9
C	LYS41
C	GLY131
C	ILE132
C	GLY133
C	GLY134

site_id	AC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 C 203

Chain	Residue
C	ASP143
C	VAL144
C	HOH335

site_id	AC9
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SO4 D 201

Chain	Residue
D	LYS35
D	THR36
D	HOH349
E	GLN180
E	HOH337

site_id	BC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SO4 D 202

Chain	Residue
C	LYS93
D	ARG172
F	LYS25
F	HOH301

site_id	BC2
Number of Residues	7
Details	BINDING SITE FOR RESIDUE SO4 D 203

Chain	Residue
D	GLU9
D	LYS41
D	GLY131
D	ILE132
D	GLY133
D	GLY134
D	HOH308

site_id	BC3
Number of Residues	2
Details	BINDING SITE FOR RESIDUE SO4 D 204

Chain	Residue
D	HIS78
D	HOH310

site_id	BC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 D 205

Chain	Residue
D	VAL91
D	ASP92
D	LYS93

site_id	BC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SO4 E 201

Chain	Residue
D	LYS25
D	LYS25
E	ARG172
E	HOH303

site_id	BC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SO4 E 202

Chain	Residue
E	ARG172
E	HIS174
E	HOH301
E	HOH333

site_id	BC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE SO4 E 203

Chain	Residue
E	MET17
E	LYS35
E	THR36
F	TYR137
F	GLN180

site_id	BC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 E 204

Chain	Residue
E	GLU9
E	LYS41
E	GLY131
E	ILE132
E	GLY133
E	GLY134

site_id	BC9
Number of Residues	8
Details	BINDING SITE FOR RESIDUE SO4 F 201

Chain	Residue
D	ARG94
D	GLU175
F	ASP143
F	VAL144
F	SER145
F	HOH302
F	HOH305
F	HOH329

site_id	CC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 F 202

Chain	Residue
D	TYR137
D	GLN180
F	MET17
F	THR36
F	PHE42
F	HOH319

site_id	CC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 F 203

Chain	Residue
F	GLU9
F	LYS41
F	GLY131
F	ILE132
F	GLY133
F	GLY134

site_id	CC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE SO4 G 201

Chain	Residue
G	LYS35
G	THR36
G	GLN180
G	HOH322

site_id	CC4
Number of Residues	7
Details	BINDING SITE FOR RESIDUE SO4 G 202

Chain	Residue
G	GLU9
G	ILE37
G	LYS41
G	GLY131
G	ILE132
G	GLY133
G	GLY134

site_id	CC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 H 201

Chain	Residue
H	LYS35
H	THR36
H	PHE42
H	TYR137
H	GLN180
H	HOH343

site_id	CC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 H 202

Chain	Residue
B	SER26
B	GLN55
H	LYS93
H	ARG94
H	ARG172
H	HOH336

site_id	CC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE SO4 H 203

Chain	Residue
H	GLU9
H	LYS41
H	GLY131
H	ILE132
H	GLY133
H	HOH357

site_id	CC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 H 204

Chain	Residue
H	ASP92
H	LYS93
H	GLN95

site_id	CC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL H 205

Chain	Residue
H	ARG94
H	ARG172
H	HOH337

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	656
Details	Domain: {"description":"BMC 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU01278","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	688
Details	Domain: {"description":"BMC 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU01278","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	8
Details	Binding site: {"evidences":[{"source":"PubMed","id":"20870711","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)