3VAB
Crystal structure of Diaminopimelate decarboxylase from Brucella melitensis bound to PLP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0008836 | molecular_function | diaminopimelate decarboxylase activity |
| A | 0009085 | biological_process | lysine biosynthetic process |
| A | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| A | 0016830 | molecular_function | carbon-carbon lyase activity |
| A | 0016831 | molecular_function | carboxy-lyase activity |
| A | 0030170 | molecular_function | pyridoxal phosphate binding |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0008836 | molecular_function | diaminopimelate decarboxylase activity |
| B | 0009085 | biological_process | lysine biosynthetic process |
| B | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| B | 0016830 | molecular_function | carbon-carbon lyase activity |
| B | 0016831 | molecular_function | carboxy-lyase activity |
| B | 0030170 | molecular_function | pyridoxal phosphate binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 A 423 |
| Chain | Residue |
| A | ARG176 |
| A | ARG180 |
| A | GLU224 |
| A | HOH430 |
| A | HOH533 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO A 424 |
| Chain | Residue |
| A | HOH553 |
| A | PHE303 |
| A | ASP341 |
| A | THR349 |
| A | LEU355 |
| site_id | AC3 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE EDO A 425 |
| Chain | Residue |
| A | THR383 |
| A | TYR384 |
| A | SER386 |
| A | HOH634 |
| B | SER64 |
| B | ARG89 |
| B | VAL379 |
| B | HOH510 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO B 423 |
| Chain | Residue |
| A | SER64 |
| A | ARG89 |
| A | VAL379 |
| B | THR383 |
| B | SER386 |
| B | HOH587 |
Functional Information from PROSITE/UniProt
| site_id | PS00878 |
| Number of Residues | 19 |
| Details | ODR_DC_2_1 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. YAlKANsnqaVLtaLaklG |
| Chain | Residue | Details |
| A | TYR58-GLY76 |
| site_id | PS00879 |
| Number of Residues | 16 |
| Details | ODR_DC_2_2 Orn/DAP/Arg decarboxylases family 2 signature 2. Adghn..IrHVDVGGGLG |
| Chain | Residue | Details |
| A | ALA227-GLY242 |
