3VAB
Crystal structure of Diaminopimelate decarboxylase from Brucella melitensis bound to PLP
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003824 | molecular_function | catalytic activity |
A | 0008836 | molecular_function | diaminopimelate decarboxylase activity |
A | 0009085 | biological_process | lysine biosynthetic process |
A | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
A | 0016830 | molecular_function | carbon-carbon lyase activity |
A | 0016831 | molecular_function | carboxy-lyase activity |
A | 0030170 | molecular_function | pyridoxal phosphate binding |
B | 0003824 | molecular_function | catalytic activity |
B | 0008836 | molecular_function | diaminopimelate decarboxylase activity |
B | 0009085 | biological_process | lysine biosynthetic process |
B | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
B | 0016830 | molecular_function | carbon-carbon lyase activity |
B | 0016831 | molecular_function | carboxy-lyase activity |
B | 0030170 | molecular_function | pyridoxal phosphate binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 A 423 |
Chain | Residue |
A | ARG176 |
A | ARG180 |
A | GLU224 |
A | HOH430 |
A | HOH533 |
site_id | AC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A 424 |
Chain | Residue |
A | HOH553 |
A | PHE303 |
A | ASP341 |
A | THR349 |
A | LEU355 |
site_id | AC3 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO A 425 |
Chain | Residue |
A | THR383 |
A | TYR384 |
A | SER386 |
A | HOH634 |
B | SER64 |
B | ARG89 |
B | VAL379 |
B | HOH510 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B 423 |
Chain | Residue |
A | SER64 |
A | ARG89 |
A | VAL379 |
B | THR383 |
B | SER386 |
B | HOH587 |
Functional Information from PROSITE/UniProt
site_id | PS00878 |
Number of Residues | 19 |
Details | ODR_DC_2_1 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. YAlKANsnqaVLtaLaklG |
Chain | Residue | Details |
A | TYR58-GLY76 |
site_id | PS00879 |
Number of Residues | 16 |
Details | ODR_DC_2_2 Orn/DAP/Arg decarboxylases family 2 signature 2. Adghn..IrHVDVGGGLG |
Chain | Residue | Details |
A | ALA227-GLY242 |