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3V80

Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with 5'-O-Propargylamino-5'-deoxyadenosine

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003951molecular_functionNAD+ kinase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006741biological_processNADP biosynthetic process
A0016301molecular_functionkinase activity
A0016310biological_processphosphorylation
A0016740molecular_functiontransferase activity
A0019674biological_processNAD metabolic process
A0046872molecular_functionmetal ion binding
A0051287molecular_functionNAD binding
Functional Information from PDB Data
site_idAC1
Number of Residues13
DetailsBINDING SITE FOR RESIDUE AOC A 301
ChainResidue
ALEU49
AILE187
AHIS223
AAOC302
AHOH439
AASN122
AGLU123
AGLY149
AASP150
AALA162
ATYR163
ASER166
AALA185

site_idAC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE AOC A 302
ChainResidue
AASP45
ALEU72
APHE74
ATYR75
AASN122
ASER158
ATHR161
AALA162
AILE187
ATYR192
AAOC301
AHOH439
AHOH440
AHOH462
AHOH477

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE CIT A 303
ChainResidue
AVAL98
ATYR100
AHIS173
AARG247
APHE251
APRO252
APHE253
AARG256
AHOH423
AHOH434

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 304
ChainResidue
ALYS8
AGLY44
AGLY46
ATHR47
AHIS71
AHOH440
AHOH487

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_00361, ECO:0000269|PubMed:17686780
ChainResidueDetails
AASP45

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00361, ECO:0000269|PubMed:17686780
ChainResidueDetails
AASP45
AGLY46
AASN122
ASER158
ATHR161
AHIS223

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00361
ChainResidueDetails
AARG148

site_idSWS_FT_FI4
Number of Residues1
DetailsBINDING: BINDING => ECO:0000305|PubMed:17686780
ChainResidueDetails
AASP150

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PDB entries from 2024-04-24

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