3USF
Crystal structure of DAVA-4
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005737 | cellular_component | cytoplasm |
A | 0006782 | biological_process | protoporphyrinogen IX biosynthetic process |
A | 0008483 | molecular_function | transaminase activity |
A | 0015995 | biological_process | chlorophyll biosynthetic process |
A | 0016853 | molecular_function | isomerase activity |
A | 0030170 | molecular_function | pyridoxal phosphate binding |
A | 0033014 | biological_process | tetrapyrrole biosynthetic process |
A | 0042286 | molecular_function | glutamate-1-semialdehyde 2,1-aminomutase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0006782 | biological_process | protoporphyrinogen IX biosynthetic process |
B | 0008483 | molecular_function | transaminase activity |
B | 0015995 | biological_process | chlorophyll biosynthetic process |
B | 0016853 | molecular_function | isomerase activity |
B | 0030170 | molecular_function | pyridoxal phosphate binding |
B | 0033014 | biological_process | tetrapyrrole biosynthetic process |
B | 0042286 | molecular_function | glutamate-1-semialdehyde 2,1-aminomutase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE PLR A 5000 |
Chain | Residue |
A | HOZ1 |
A | ASP1245 |
A | VAL1247 |
A | MET1248 |
A | LYS1273 |
B | THR2305 |
A | HOH40 |
A | HOH78 |
A | HOH121 |
A | HOH175 |
A | GLY1123 |
A | THR1124 |
A | TYR1150 |
A | ASN1217 |
site_id | AC2 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE HOZ A 1 |
Chain | Residue |
A | HOH175 |
A | HOH210 |
A | SER1029 |
A | VAL1031 |
A | TRP1067 |
A | SER1163 |
A | ASN1217 |
A | MET1248 |
A | LYS1273 |
A | GLU1406 |
A | PLR5000 |
B | ALA2303 |
B | GLY2304 |
B | THR2305 |
site_id | AC3 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE PLR B 6000 |
Chain | Residue |
A | THR1305 |
B | HOH25 |
B | HOH52 |
B | HOH70 |
B | HOH132 |
B | SER2122 |
B | GLY2123 |
B | THR2124 |
B | TYR2150 |
B | ASN2217 |
B | ASP2245 |
B | MET2248 |
B | LYS2273 |
Functional Information from PROSITE/UniProt
site_id | PS00600 |
Number of Residues | 37 |
Details | AA_TRANSFER_CLASS_3 Aminotransferases class-III pyridoxal-phosphate attachment site. LVfDEVmt.GF.RiAyggvqekfgvtp....DLTtlGKiigGG |
Chain | Residue | Details |
A | LEU1242-GLY1278 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | MOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000255|HAMAP-Rule:MF_00375 |
Chain | Residue | Details |
A | LYS1273 | |
B | LYS2273 |