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3UBR

Laue structure of Shewanella oneidensis cytochrome-c Nitrite Reductase

Functional Information from GO Data
ChainGOidnamespacecontents
A0005506molecular_functioniron ion binding
A0005509molecular_functioncalcium ion binding
A0016491molecular_functionoxidoreductase activity
A0019645biological_processanaerobic electron transport chain
A0020037molecular_functionheme binding
A0030288cellular_componentouter membrane-bounded periplasmic space
A0042128biological_processnitrate assimilation
A0042279molecular_functionnitrite reductase (cytochrome, ammonia-forming) activity
A0042597cellular_componentperiplasmic space
A0046872molecular_functionmetal ion binding
B0005506molecular_functioniron ion binding
B0005509molecular_functioncalcium ion binding
B0016491molecular_functionoxidoreductase activity
B0019645biological_processanaerobic electron transport chain
B0020037molecular_functionheme binding
B0030288cellular_componentouter membrane-bounded periplasmic space
B0042128biological_processnitrate assimilation
B0042279molecular_functionnitrite reductase (cytochrome, ammonia-forming) activity
B0042597cellular_componentperiplasmic space
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues19
DetailsBINDING SITE FOR RESIDUE HEC A 471
ChainResidue
ALYS86
ATYR206
APHE208
AHIS257
AHIS381
AHEC473
AHOH488
AHOH516
AHOH519
AHOH531
AHOH539
AASP97
ATHR101
AARG103
ACYS119
ACYS122
ALYS123
ACYS202
AHIS203

site_idAC2
Number of Residues11
DetailsBINDING SITE FOR RESIDUE HEC A 472
ChainResidue
APHE46
AGLN49
AGLY156
ACYS157
ACYS160
AHIS161
APRO166
AVAL276
AMET280
ATHR292
AHIS294

site_idAC3
Number of Residues21
DetailsBINDING SITE FOR RESIDUE HEC A 473
ChainResidue
ASER59
APRO88
AARG89
AHIS91
ATYR93
AALA94
AASP97
ACYS122
ALYS123
AILE155
AASP159
AARG172
AVAL198
ACYS199
ACYS202
AHIS203
AHIS279
AVAL296
AGLY297
AHEC471
AHEC474

site_idAC4
Number of Residues17
DetailsBINDING SITE FOR RESIDUE HEC A 474
ChainResidue
APRO88
AHIS203
AGLU259
ATRP263
AHIS268
AVAL273
ASER274
ACYS275
ACYS278
AHIS279
APRO299
ALYS326
AHIS381
AGLY382
AALA385
AHIS386
AHEC473

site_idAC5
Number of Residues13
DetailsBINDING SITE FOR RESIDUE HEC A 475
ChainResidue
AILE267
AHIS268
AASN271
AVAL273
APRO299
APHE300
ATHR306
ACYS307
ACYS310
AHIS311
AARG325
BHIS311
BGLN313

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 476
ChainResidue
AGLU205
ATYR206
ATYR235
ALYS254
AGLN256

site_idAC7
Number of Residues18
DetailsBINDING SITE FOR RESIDUE HEC B 471
ChainResidue
BHIS257
BHEC473
BHOH484
BHOH488
BHOH499
BLYS86
BPRO88
BASP97
BTHR101
BARG103
BLEU115
BCYS119
BCYS122
BLYS123
BCYS202
BHIS203
BTYR206
BPHE208

site_idAC8
Number of Residues12
DetailsBINDING SITE FOR RESIDUE HEC B 472
ChainResidue
BPHE46
BGLN49
BTYR50
BGLY156
BCYS157
BCYS160
BHIS161
BPRO166
BMET280
BLYS282
BTHR292
BHIS294

site_idAC9
Number of Residues20
DetailsBINDING SITE FOR RESIDUE HEC B 473
ChainResidue
BSER59
BPRO88
BARG89
BGLY90
BHIS91
BTYR93
BALA94
BASP97
BCYS122
BILE155
BVAL198
BCYS199
BGLN201
BCYS202
BHIS203
BHIS279
BMET280
BVAL296
BHEC471
BHEC474

site_idBC1
Number of Residues17
DetailsBINDING SITE FOR RESIDUE HEC B 474
ChainResidue
BHIS203
BGLU259
BTRP263
BHIS268
BVAL273
BSER274
BCYS275
BCYS278
BHIS279
BASN298
BPRO299
BLYS326
BGLY382
BALA385
BHIS386
BHEC473
BHEC475

site_idBC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE HEC B 475
ChainResidue
AHIS311
AGLN313
BILE267
BHIS268
BASN271
BVAL273
BPHE300
BTHR306
BCYS307
BCYS310
BHIS311
BARG325
BHEC474

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA B 476
ChainResidue
BGLU205
BTYR206
BLYS254
BGLN256
BHOH483

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues18
DetailsBINDING: axial binding residue => ECO:0000255|HAMAP-Rule:MF_01182, ECO:0007744|PDB:3UBR
ChainResidueDetails
AHIS91
BHIS91
BLYS123
BHIS161
BHIS203
BHIS268
BHIS279
BHIS294
BHIS311
BHIS386
ALYS123
AHIS161
AHIS203
AHIS268
AHIS279
AHIS294
AHIS311
AHIS386

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING: covalent => ECO:0000255|HAMAP-Rule:MF_01182, ECO:0007744|PDB:3UBR
ChainResidueDetails
ACYS119
BCYS307
ACYS199
ACYS202
ACYS275
ACYS307
BCYS119
BCYS199
BCYS202
BCYS275

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: covalent => ECO:0000255|HAMAP-Rule:MF_01182, ECO:0000305
ChainResidueDetails
ACYS122
BCYS122

site_idSWS_FT_FI4
Number of Residues8
DetailsBINDING: covalent => ECO:0000255|HAMAP-Rule:MF_01182
ChainResidueDetails
ACYS157
ACYS160
ACYS278
ACYS310
BCYS157
BCYS160
BCYS278
BCYS310

site_idSWS_FT_FI5
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01182, ECO:0007744|PDB:3UBR
ChainResidueDetails
AGLU205
ALYS254
AGLN256
BGLU205
BLYS254
BGLN256

site_idSWS_FT_FI6
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01182
ChainResidueDetails
ATYR206
AHIS257
BTYR206
BHIS257

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PDB entries from 2024-07-10

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