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3U6B

Ef-tu (escherichia coli) in complex with nvp-ldi028

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0003746molecular_functiontranslation elongation factor activity
A0003924molecular_functionGTPase activity
A0005515molecular_functionprotein binding
A0005525molecular_functionGTP binding
A0005737cellular_componentcytoplasm
A0005886cellular_componentplasma membrane
A0006412biological_processtranslation
A0006414biological_processtranslational elongation
A0032045cellular_componentguanyl-nucleotide exchange factor complex
A0046677biological_processresponse to antibiotic
A0097216molecular_functionguanosine tetraphosphate binding
B0003723molecular_functionRNA binding
B0003746molecular_functiontranslation elongation factor activity
B0003924molecular_functionGTPase activity
B0005515molecular_functionprotein binding
B0005525molecular_functionGTP binding
B0005737cellular_componentcytoplasm
B0005886cellular_componentplasma membrane
B0006412biological_processtranslation
B0006414biological_processtranslational elongation
B0032045cellular_componentguanyl-nucleotide exchange factor complex
B0046677biological_processresponse to antibiotic
B0097216molecular_functionguanosine tetraphosphate binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 401
ChainResidue
ATHR25
AGDP402
AHOH503
AHOH514
AHOH517
AHOH531

site_idAC2
Number of Residues18
DetailsBINDING SITE FOR RESIDUE GDP A 402
ChainResidue
ALYS24
ATHR25
ATHR26
AASN135
ALYS136
AASP138
AMET139
ASER173
AALA174
ALEU175
AMG401
AHOH514
AHOH517
AHOH554
AHOH562
AASP21
AHIS22
AGLY23

site_idAC3
Number of Residues20
DetailsBINDING SITE FOR RESIDUE GDP B 401
ChainResidue
BHIS19
BASP21
BHIS22
BGLY23
BLYS24
BTHR25
BTHR26
BASN135
BLYS136
BASP138
BMET139
BSER173
BALA174
BLEU175
BMG402
BHOH505
BHOH509
BHOH512
BHOH514
BHOH515

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 402
ChainResidue
BTHR25
BGDP401
BHOH505
BHOH512
BHOH514
BHOH516

site_idAC5
Number of Residues17
DetailsBINDING SITE FOR CHAIN C OF NVP-LDI028
ChainResidue
BGLU143
BGLU215
BASP216
BPHE218
BVAL226
BTHR228
BTHR256
BGLY257
BGLU259
BPHE261
BARG262
BARG269
BASN273
BVAL274
BGLY275
BLEU277
CHOH101

site_idAC6
Number of Residues17
DetailsBINDING SITE FOR CHAIN D OF NVP-LDI028
ChainResidue
AGLU143
AILE206
AGLU215
AASP216
APHE218
ATHR228
ATHR256
AGLY257
AGLU259
AMET260
APHE261
AARG262
AARG269
AASN273
AVAL274
AGLY275
ALEU277

Functional Information from PROSITE/UniProt
site_idPS00301
Number of Residues16
DetailsG_TR_1 Translational (tr)-type guanine nucleotide-binding (G) domain signature. DNapeEKaRGITIntS
ChainResidueDetails
AASP50-SER65

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: N4-methylasparagine => ECO:0000305|PubMed:7592050
ChainResidueDetails
CMEN3
DMEN3
AASN135
BGLY18
BASP80
BASN135

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: 3-hydroxyphenylalanine => ECO:0000250
ChainResidueDetails
CBB88
DBB88

site_idSWS_FT_FI3
Number of Residues8
DetailsCROSSLNK: Thiazole-4-carboxylic acid (Ser-Cys)
ChainResidueDetails
CSER1
CMH611
CBB92
C8BB12
DSER1
DMH611
DBB92
D8BB12

site_idSWS_FT_FI4
Number of Residues4
DetailsCROSSLNK: Thiazole-4-carboxylic acid (Cys-Cys)
ChainResidueDetails
CBB910
CBB99
DBB910
DBB99

site_idSWS_FT_FI5
Number of Residues4
DetailsCROSSLNK: 5-methylthiazole-4-carboxylic acid (Asn-Cys)
ChainResidueDetails
CMEN3
CBB64
DMEN3
DBB64

site_idSWS_FT_FI6
Number of Residues4
DetailsCROSSLNK: 5-(methoxymethyl)thiazole-4-carboxylic acid (Val-Cys)
ChainResidueDetails
CVAL5
CBB76
DVAL5
DBB76

site_idSWS_FT_FI7
Number of Residues2
DetailsCROSSLNK: Thiazole-4-carboxylic acid (Phe-Cys)
ChainResidueDetails
CBB88
DBB88

Catalytic Information from CSA
site_idMCSA1
Number of Residues4
DetailsM-CSA 535
ChainResidueDetails
AASP21electrostatic stabiliser
ALYS24electrostatic stabiliser
ATHR25metal ligand
AHIS84electrostatic stabiliser

site_idMCSA2
Number of Residues4
DetailsM-CSA 535
ChainResidueDetails
BASP21electrostatic stabiliser
BLYS24electrostatic stabiliser
BTHR25metal ligand
BHIS84electrostatic stabiliser

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PDB entries from 2024-07-10

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