3U41
Crystal structure of Escherichia coli DmsD in space group P212121
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005048 | molecular_function | signal sequence binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005886 | cellular_component | plasma membrane |
| A | 0051604 | biological_process | protein maturation |
| A | 0061077 | biological_process | chaperone-mediated protein folding |
| B | 0005048 | molecular_function | signal sequence binding |
| B | 0005515 | molecular_function | protein binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005886 | cellular_component | plasma membrane |
| B | 0051604 | biological_process | protein maturation |
| B | 0061077 | biological_process | chaperone-mediated protein folding |
| C | 0005048 | molecular_function | signal sequence binding |
| C | 0005515 | molecular_function | protein binding |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005886 | cellular_component | plasma membrane |
| C | 0051604 | biological_process | protein maturation |
| C | 0061077 | biological_process | chaperone-mediated protein folding |
| D | 0005048 | molecular_function | signal sequence binding |
| D | 0005515 | molecular_function | protein binding |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0005886 | cellular_component | plasma membrane |
| D | 0051604 | biological_process | protein maturation |
| D | 0061077 | biological_process | chaperone-mediated protein folding |
| E | 0005048 | molecular_function | signal sequence binding |
| E | 0005515 | molecular_function | protein binding |
| E | 0005737 | cellular_component | cytoplasm |
| E | 0005886 | cellular_component | plasma membrane |
| E | 0051604 | biological_process | protein maturation |
| E | 0061077 | biological_process | chaperone-mediated protein folding |
| F | 0005048 | molecular_function | signal sequence binding |
| F | 0005515 | molecular_function | protein binding |
| F | 0005737 | cellular_component | cytoplasm |
| F | 0005886 | cellular_component | plasma membrane |
| F | 0051604 | biological_process | protein maturation |
| F | 0061077 | biological_process | chaperone-mediated protein folding |
| G | 0005048 | molecular_function | signal sequence binding |
| G | 0005515 | molecular_function | protein binding |
| G | 0005737 | cellular_component | cytoplasm |
| G | 0005886 | cellular_component | plasma membrane |
| G | 0051604 | biological_process | protein maturation |
| G | 0061077 | biological_process | chaperone-mediated protein folding |
| H | 0005048 | molecular_function | signal sequence binding |
| H | 0005515 | molecular_function | protein binding |
| H | 0005737 | cellular_component | cytoplasm |
| H | 0005886 | cellular_component | plasma membrane |
| H | 0051604 | biological_process | protein maturation |
| H | 0061077 | biological_process | chaperone-mediated protein folding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE GOL A 301 |
| Chain | Residue |
| A | GLN7 |
| A | ASP8 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL A 302 |
| Chain | Residue |
| A | PHE156 |
| A | PRO157 |
| A | TRP158 |
| A | THR160 |
| A | ARG161 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL A 303 |
| Chain | Residue |
| H | ILE167 |
| H | GLU168 |
| A | GLU171 |
| A | ARG176 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL A 304 |
| Chain | Residue |
| A | TYR22 |
| A | TYR23 |
| A | PHE117 |
| A | GLU118 |
| A | MET119 |
| A | LYS120 |
| A | SER130 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL A 305 |
| Chain | Residue |
| A | TYR22 |
| A | GLU123 |
| A | HIS127 |
| B | TRS306 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL A 306 |
| Chain | Residue |
| A | TRP87 |
| A | VAL90 |
| A | SER96 |
| A | HOH413 |
| A | HOH423 |
| B | HOH424 |
| site_id | AC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 A 307 |
| Chain | Residue |
| A | LEU48 |
| A | PRO49 |
| A | GLU50 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL B 301 |
| Chain | Residue |
| B | PRO47 |
| B | LEU48 |
| B | PRO49 |
| B | GOL302 |
| site_id | AC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL B 302 |
| Chain | Residue |
| B | GLU50 |
| B | GOL301 |
| B | HOH442 |
| site_id | BC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL B 303 |
| Chain | Residue |
| B | TYR22 |
| B | PHE76 |
| B | LYS120 |
| B | GLU123 |
| B | HIS127 |
| B | HOH440 |
| site_id | BC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL B 304 |
| Chain | Residue |
| B | GLU26 |
| B | THR67 |
| B | GLN70 |
| B | HOH445 |
| site_id | BC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL B 305 |
| Chain | Residue |
| A | HOH463 |
| B | TYR22 |
| B | TYR23 |
| B | GLU118 |
| B | MET119 |
| B | SER130 |
| site_id | BC4 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE TRS B 306 |
| Chain | Residue |
| A | GLU123 |
| A | GOL305 |
| B | ARG15 |
| B | GLU140 |
| B | HOH421 |
| B | HOH424 |
| B | HOH427 |
| B | HOH435 |
| site_id | BC5 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL C 301 |
| Chain | Residue |
| C | PHE99 |
| C | ASN122 |
| C | GLU123 |
| C | PRO124 |
| C | TRS309 |
| C | HOH412 |
| D | TRP137 |
| D | GOL308 |
| site_id | BC6 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE GOL C 302 |
| Chain | Residue |
| C | ARG161 |
| site_id | BC7 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE GOL C 303 |
| Chain | Residue |
| C | TRP153 |
| site_id | BC8 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE GOL C 304 |
| Chain | Residue |
| C | ARG107 |
| site_id | BC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL C 305 |
| Chain | Residue |
| C | THR2 |
| C | HIS3 |
| C | PHE4 |
| C | GLU148 |
| C | GLN192 |
| C | LEU194 |
| site_id | CC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL C 306 |
| Chain | Residue |
| C | ARG15 |
| C | GLU140 |
| C | HOH406 |
| C | HOH481 |
| site_id | CC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL C 307 |
| Chain | Residue |
| C | GLY142 |
| C | ARG143 |
| C | GLN144 |
| C | THR145 |
| C | GLU146 |
| site_id | CC3 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL C 308 |
| Chain | Residue |
| C | SER5 |
| C | GLN6 |
| C | GLN7 |
| C | ASP8 |
| C | ASN9 |
| C | PHE10 |
| C | SER11 |
| C | HOH472 |
| site_id | CC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE TRS C 309 |
| Chain | Residue |
| C | GOL301 |
| C | TYR22 |
| C | PHE76 |
| C | GLU123 |
| site_id | CC5 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL C 310 |
| Chain | Residue |
| C | ASP8 |
| site_id | CC6 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL D 301 |
| Chain | Residue |
| C | ASN122 |
| D | TYR22 |
| D | TYR23 |
| D | GLU118 |
| D | MET119 |
| D | SER130 |
| D | LEU133 |
| D | HOH469 |
| site_id | CC7 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE GOL D 302 |
| Chain | Residue |
| D | PRO49 |
| D | GLU50 |
| site_id | CC8 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL D 303 |
| Chain | Residue |
| A | GLU140 |
| D | GLU123 |
| D | HOH401 |
| site_id | CC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL D 304 |
| Chain | Residue |
| C | VAL199 |
| C | PRO201 |
| D | THR160 |
| D | ASP164 |
| D | ARG183 |
| site_id | DC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL D 305 |
| Chain | Residue |
| D | TYR22 |
| D | TRP72 |
| D | GLU123 |
| D | HOH404 |
| site_id | DC2 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE GOL D 306 |
| Chain | Residue |
| D | GLU171 |
| site_id | DC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL D 307 |
| Chain | Residue |
| D | LEU104 |
| D | ARG107 |
| D | GLN108 |
| site_id | DC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL D 308 |
| Chain | Residue |
| C | GOL301 |
| D | ARG15 |
| D | GLU140 |
| D | HOH436 |
| site_id | DC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL D 309 |
| Chain | Residue |
| A | GLU140 |
| D | LEU82 |
| D | PRO85 |
| D | HOH413 |
| D | HOH444 |
| site_id | DC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE PEG D 310 |
| Chain | Residue |
| D | GLN7 |
| D | ASP8 |
| D | ASN9 |
| D | HOH437 |
| site_id | DC7 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE GOL E 301 |
| Chain | Residue |
| E | GLU140 |
| E | HOH425 |
| site_id | DC8 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL E 302 |
| Chain | Residue |
| C | SER52 |
| C | LEU184 |
| E | PRO55 |
| E | ALA59 |
| E | ARG176 |
| E | ALA177 |
| E | GLU180 |
| E | HOH427 |
| site_id | DC9 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL E 303 |
| Chain | Residue |
| E | TYR22 |
| E | TYR23 |
| E | PHE117 |
| E | GLU118 |
| E | MET119 |
| E | LYS120 |
| E | LEU133 |
| E | GOL304 |
| site_id | EC1 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE GOL E 304 |
| Chain | Residue |
| E | TYR22 |
| E | TRP87 |
| E | MET119 |
| E | GLU123 |
| E | PRO124 |
| E | HIS127 |
| E | SER130 |
| E | GOL303 |
| E | GOL307 |
| site_id | EC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE GOL E 305 |
| Chain | Residue |
| E | GLN7 |
| E | ASP8 |
| site_id | EC3 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE GOL E 306 |
| Chain | Residue |
| E | PRO49 |
| E | HOH429 |
| site_id | EC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL E 307 |
| Chain | Residue |
| E | TYR22 |
| E | TRP72 |
| E | TRP87 |
| E | GLU123 |
| E | HIS127 |
| E | GOL304 |
| site_id | EC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL E 308 |
| Chain | Residue |
| E | LEU82 |
| E | TRP87 |
| E | HOH418 |
| F | GOL305 |
| site_id | EC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL F 301 |
| Chain | Residue |
| F | ALA24 |
| F | PRO25 |
| F | GLU26 |
| F | ALA69 |
| F | TRP72 |
| F | GLN73 |
| site_id | EC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL F 302 |
| Chain | Residue |
| F | TYR22 |
| F | GLU123 |
| F | HIS127 |
| site_id | EC8 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL F 303 |
| Chain | Residue |
| E | ASN122 |
| F | TYR22 |
| F | TYR23 |
| F | PHE117 |
| F | GLU118 |
| F | MET119 |
| F | SER130 |
| site_id | EC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL F 304 |
| Chain | Residue |
| F | TRP87 |
| F | LEU98 |
| F | GLU123 |
| H | ARG15 |
| H | GLU140 |
| site_id | FC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL F 305 |
| Chain | Residue |
| E | ASN122 |
| E | GLU123 |
| E | GOL308 |
| F | GLU140 |
| F | HOH413 |
| F | HOH432 |
| site_id | FC2 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL F 306 |
| Chain | Residue |
| F | GLU50 |
| site_id | FC3 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE CL F 307 |
| Chain | Residue |
| F | ASP8 |
| site_id | FC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE GOL H 301 |
| Chain | Residue |
| H | SER27 |
| H | ALA28 |
