Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

3U41

Crystal structure of Escherichia coli DmsD in space group P212121

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005048	molecular_function	signal sequence binding
A	0005515	molecular_function	protein binding
A	0005737	cellular_component	cytoplasm
A	0005886	cellular_component	plasma membrane
A	0051604	biological_process	protein maturation
B	0005048	molecular_function	signal sequence binding
B	0005515	molecular_function	protein binding
B	0005737	cellular_component	cytoplasm
B	0005886	cellular_component	plasma membrane
B	0051604	biological_process	protein maturation
C	0005048	molecular_function	signal sequence binding
C	0005515	molecular_function	protein binding
C	0005737	cellular_component	cytoplasm
C	0005886	cellular_component	plasma membrane
C	0051604	biological_process	protein maturation
D	0005048	molecular_function	signal sequence binding
D	0005515	molecular_function	protein binding
D	0005737	cellular_component	cytoplasm
D	0005886	cellular_component	plasma membrane
D	0051604	biological_process	protein maturation
E	0005048	molecular_function	signal sequence binding
E	0005515	molecular_function	protein binding
E	0005737	cellular_component	cytoplasm
E	0005886	cellular_component	plasma membrane
E	0051604	biological_process	protein maturation
F	0005048	molecular_function	signal sequence binding
F	0005515	molecular_function	protein binding
F	0005737	cellular_component	cytoplasm
F	0005886	cellular_component	plasma membrane
F	0051604	biological_process	protein maturation
G	0005048	molecular_function	signal sequence binding
G	0005515	molecular_function	protein binding
G	0005737	cellular_component	cytoplasm
G	0005886	cellular_component	plasma membrane
G	0051604	biological_process	protein maturation
H	0005048	molecular_function	signal sequence binding
H	0005515	molecular_function	protein binding
H	0005737	cellular_component	cytoplasm
H	0005886	cellular_component	plasma membrane
H	0051604	biological_process	protein maturation

Functional Information from PDB Data

site_id	AC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE GOL A 301

Chain	Residue
A	GLN7
A	ASP8

site_id	AC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL A 302

Chain	Residue
A	PHE156
A	PRO157
A	TRP158
A	THR160
A	ARG161

site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL A 303

Chain	Residue
H	ILE167
H	GLU168
A	GLU171
A	ARG176

site_id	AC4
Number of Residues	7
Details	BINDING SITE FOR RESIDUE GOL A 304

Chain	Residue
A	TYR22
A	TYR23
A	PHE117
A	GLU118
A	MET119
A	LYS120
A	SER130

site_id	AC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL A 305

Chain	Residue
A	TYR22
A	GLU123
A	HIS127
B	TRS306

site_id	AC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL A 306

Chain	Residue
A	TRP87
A	VAL90
A	SER96
A	HOH413
A	HOH423
B	HOH424

site_id	AC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE SO4 A 307

Chain	Residue
A	LEU48
A	PRO49
A	GLU50

site_id	AC8
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL B 301

Chain	Residue
B	PRO47
B	LEU48
B	PRO49
B	GOL302

site_id	AC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL B 302

Chain	Residue
B	GLU50
B	GOL301
B	HOH442

site_id	BC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL B 303

Chain	Residue
B	TYR22
B	PHE76
B	LYS120
B	GLU123
B	HIS127
B	HOH440

site_id	BC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL B 304

Chain	Residue
B	GLU26
B	THR67
B	GLN70
B	HOH445

site_id	BC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL B 305

Chain	Residue
A	HOH463
B	TYR22
B	TYR23
B	GLU118
B	MET119
B	SER130

site_id	BC4
Number of Residues	8
Details	BINDING SITE FOR RESIDUE TRS B 306

Chain	Residue
A	GLU123
A	GOL305
B	ARG15
B	GLU140
B	HOH421
B	HOH424
B	HOH427
B	HOH435

site_id	BC5
Number of Residues	8
Details	BINDING SITE FOR RESIDUE GOL C 301

Chain	Residue
C	PHE99
C	ASN122
C	GLU123
C	PRO124
C	TRS309
C	HOH412
D	TRP137
D	GOL308

site_id	BC6
Number of Residues	1
Details	BINDING SITE FOR RESIDUE GOL C 302

Chain	Residue
C	ARG161

site_id	BC7
Number of Residues	1
Details	BINDING SITE FOR RESIDUE GOL C 303

Chain	Residue
C	TRP153

site_id	BC8
Number of Residues	1
Details	BINDING SITE FOR RESIDUE GOL C 304

Chain	Residue
C	ARG107

site_id	BC9
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL C 305

Chain	Residue
C	THR2
C	HIS3
C	PHE4
C	GLU148
C	GLN192
C	LEU194

site_id	CC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL C 306

Chain	Residue
C	ARG15
C	GLU140
C	HOH406
C	HOH481

site_id	CC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL C 307

Chain	Residue
C	GLY142
C	ARG143
C	GLN144
C	THR145
C	GLU146

site_id	CC3
Number of Residues	8
Details	BINDING SITE FOR RESIDUE GOL C 308

Chain	Residue
C	SER5
C	GLN6
C	GLN7
C	ASP8
C	ASN9
C	PHE10
C	SER11
C	HOH472

site_id	CC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE TRS C 309

Chain	Residue
C	GOL301
C	TYR22
C	PHE76
C	GLU123

site_id	CC5
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CL C 310

Chain	Residue
C	ASP8

site_id	CC6
Number of Residues	8
Details	BINDING SITE FOR RESIDUE GOL D 301

Chain	Residue
C	ASN122
D	TYR22
D	TYR23
D	GLU118
D	MET119
D	SER130
D	LEU133
D	HOH469

site_id	CC7
Number of Residues	2
Details	BINDING SITE FOR RESIDUE GOL D 302

Chain	Residue
D	PRO49
D	GLU50

site_id	CC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL D 303

Chain	Residue
A	GLU140
D	GLU123
D	HOH401

site_id	CC9
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL D 304

Chain	Residue
C	VAL199
C	PRO201
D	THR160
D	ASP164
D	ARG183

site_id	DC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL D 305

Chain	Residue
D	TYR22
D	TRP72
D	GLU123
D	HOH404

site_id	DC2
Number of Residues	1
Details	BINDING SITE FOR RESIDUE GOL D 306

Chain	Residue
D	GLU171

site_id	DC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL D 307

Chain	Residue
D	LEU104
D	ARG107
D	GLN108

site_id	DC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL D 308

Chain	Residue
C	GOL301
D	ARG15
D	GLU140
D	HOH436

site_id	DC5
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL D 309

Chain	Residue
A	GLU140
D	LEU82
D	PRO85
D	HOH413
D	HOH444

site_id	DC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE PEG D 310

Chain	Residue
D	GLN7
D	ASP8
D	ASN9
D	HOH437

site_id	DC7
Number of Residues	2
Details	BINDING SITE FOR RESIDUE GOL E 301

Chain	Residue
E	GLU140
E	HOH425

site_id	DC8
Number of Residues	8
Details	BINDING SITE FOR RESIDUE GOL E 302

Chain	Residue
C	SER52
C	LEU184
E	PRO55
E	ALA59
E	ARG176
E	ALA177
E	GLU180
E	HOH427

site_id	DC9
Number of Residues	8
Details	BINDING SITE FOR RESIDUE GOL E 303

Chain	Residue
E	TYR22
E	TYR23
E	PHE117
E	GLU118
E	MET119
E	LYS120
E	LEU133
E	GOL304

site_id	EC1
Number of Residues	9
Details	BINDING SITE FOR RESIDUE GOL E 304

Chain	Residue
E	TYR22
E	TRP87
E	MET119
E	GLU123
E	PRO124
E	HIS127
E	SER130
E	GOL303
E	GOL307

site_id	EC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE GOL E 305

Chain	Residue
E	GLN7
E	ASP8

site_id	EC3
Number of Residues	2
Details	BINDING SITE FOR RESIDUE GOL E 306

Chain	Residue
E	PRO49
E	HOH429

site_id	EC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL E 307

Chain	Residue
E	TYR22
E	TRP72
E	TRP87
E	GLU123
E	HIS127
E	GOL304

site_id	EC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE GOL E 308

Chain	Residue
E	LEU82
E	TRP87
E	HOH418
F	GOL305

site_id	EC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL F 301

Chain	Residue
F	ALA24
F	PRO25
F	GLU26
F	ALA69
F	TRP72
F	GLN73

site_id	EC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE GOL F 302

Chain	Residue
F	TYR22
F	GLU123
F	HIS127

site_id	EC8
Number of Residues	7
Details	BINDING SITE FOR RESIDUE GOL F 303

Chain	Residue
E	ASN122
F	TYR22
F	TYR23
F	PHE117
F	GLU118
F	MET119
F	SER130

site_id	EC9
Number of Residues	5
Details	BINDING SITE FOR RESIDUE GOL F 304

Chain	Residue
F	TRP87
F	LEU98
F	GLU123
H	ARG15
H	GLU140

site_id	FC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE GOL F 305

Chain	Residue
E	ASN122
E	GLU123
E	GOL308
F	GLU140
F	HOH413
F	HOH432

site_id	FC2
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CL F 306

Chain	Residue
F	GLU50

site_id	FC3
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CL F 307

Chain	Residue
F	ASP8

site_id	FC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE GOL H 301

Chain	Residue
H	SER27
H	ALA28

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)