3U33
Crystal Structure of the E. coli adaptive response protein AidB in the space group P3(2)
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003677 | molecular_function | DNA binding |
A | 0003995 | molecular_function | acyl-CoA dehydrogenase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0006974 | biological_process | DNA damage response |
A | 0008470 | molecular_function | isovaleryl-CoA dehydrogenase activity |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
A | 0042802 | molecular_function | identical protein binding |
A | 0043565 | molecular_function | sequence-specific DNA binding |
A | 0045892 | biological_process | negative regulation of DNA-templated transcription |
B | 0003677 | molecular_function | DNA binding |
B | 0003995 | molecular_function | acyl-CoA dehydrogenase activity |
B | 0005515 | molecular_function | protein binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0006974 | biological_process | DNA damage response |
B | 0008470 | molecular_function | isovaleryl-CoA dehydrogenase activity |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
B | 0042802 | molecular_function | identical protein binding |
B | 0043565 | molecular_function | sequence-specific DNA binding |
B | 0045892 | biological_process | negative regulation of DNA-templated transcription |
C | 0003677 | molecular_function | DNA binding |
C | 0003995 | molecular_function | acyl-CoA dehydrogenase activity |
C | 0005515 | molecular_function | protein binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0006974 | biological_process | DNA damage response |
C | 0008470 | molecular_function | isovaleryl-CoA dehydrogenase activity |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
C | 0042802 | molecular_function | identical protein binding |
C | 0043565 | molecular_function | sequence-specific DNA binding |
C | 0045892 | biological_process | negative regulation of DNA-templated transcription |
D | 0003677 | molecular_function | DNA binding |
D | 0003995 | molecular_function | acyl-CoA dehydrogenase activity |
D | 0005515 | molecular_function | protein binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0006974 | biological_process | DNA damage response |
D | 0008470 | molecular_function | isovaleryl-CoA dehydrogenase activity |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
D | 0042802 | molecular_function | identical protein binding |
D | 0043565 | molecular_function | sequence-specific DNA binding |
D | 0045892 | biological_process | negative regulation of DNA-templated transcription |
E | 0003677 | molecular_function | DNA binding |
E | 0003995 | molecular_function | acyl-CoA dehydrogenase activity |
E | 0005515 | molecular_function | protein binding |
E | 0005737 | cellular_component | cytoplasm |
E | 0006974 | biological_process | DNA damage response |
E | 0008470 | molecular_function | isovaleryl-CoA dehydrogenase activity |
E | 0016491 | molecular_function | oxidoreductase activity |
E | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
E | 0042802 | molecular_function | identical protein binding |
E | 0043565 | molecular_function | sequence-specific DNA binding |
E | 0045892 | biological_process | negative regulation of DNA-templated transcription |
F | 0003677 | molecular_function | DNA binding |
F | 0003995 | molecular_function | acyl-CoA dehydrogenase activity |
F | 0005515 | molecular_function | protein binding |
F | 0005737 | cellular_component | cytoplasm |
F | 0006974 | biological_process | DNA damage response |
F | 0008470 | molecular_function | isovaleryl-CoA dehydrogenase activity |
F | 0016491 | molecular_function | oxidoreductase activity |
F | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
F | 0042802 | molecular_function | identical protein binding |
F | 0043565 | molecular_function | sequence-specific DNA binding |
F | 0045892 | biological_process | negative regulation of DNA-templated transcription |
G | 0003677 | molecular_function | DNA binding |
G | 0003995 | molecular_function | acyl-CoA dehydrogenase activity |
G | 0005515 | molecular_function | protein binding |
G | 0005737 | cellular_component | cytoplasm |
G | 0006974 | biological_process | DNA damage response |
G | 0008470 | molecular_function | isovaleryl-CoA dehydrogenase activity |
G | 0016491 | molecular_function | oxidoreductase activity |
G | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
G | 0042802 | molecular_function | identical protein binding |
G | 0043565 | molecular_function | sequence-specific DNA binding |
G | 0045892 | biological_process | negative regulation of DNA-templated transcription |
H | 0003677 | molecular_function | DNA binding |
H | 0003995 | molecular_function | acyl-CoA dehydrogenase activity |
H | 0005515 | molecular_function | protein binding |
H | 0005737 | cellular_component | cytoplasm |
H | 0006974 | biological_process | DNA damage response |
H | 0008470 | molecular_function | isovaleryl-CoA dehydrogenase activity |
H | 0016491 | molecular_function | oxidoreductase activity |
H | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
H | 0042802 | molecular_function | identical protein binding |
H | 0043565 | molecular_function | sequence-specific DNA binding |
H | 0045892 | biological_process | negative regulation of DNA-templated transcription |
I | 0003677 | molecular_function | DNA binding |
I | 0003995 | molecular_function | acyl-CoA dehydrogenase activity |
I | 0005515 | molecular_function | protein binding |
I | 0005737 | cellular_component | cytoplasm |
I | 0006974 | biological_process | DNA damage response |
I | 0008470 | molecular_function | isovaleryl-CoA dehydrogenase activity |
I | 0016491 | molecular_function | oxidoreductase activity |
I | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
I | 0042802 | molecular_function | identical protein binding |
I | 0043565 | molecular_function | sequence-specific DNA binding |
I | 0045892 | biological_process | negative regulation of DNA-templated transcription |
J | 0003677 | molecular_function | DNA binding |
J | 0003995 | molecular_function | acyl-CoA dehydrogenase activity |
J | 0005515 | molecular_function | protein binding |
J | 0005737 | cellular_component | cytoplasm |
J | 0006974 | biological_process | DNA damage response |
J | 0008470 | molecular_function | isovaleryl-CoA dehydrogenase activity |
J | 0016491 | molecular_function | oxidoreductase activity |
J | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
J | 0042802 | molecular_function | identical protein binding |
J | 0043565 | molecular_function | sequence-specific DNA binding |
J | 0045892 | biological_process | negative regulation of DNA-templated transcription |
K | 0003677 | molecular_function | DNA binding |
K | 0003995 | molecular_function | acyl-CoA dehydrogenase activity |
K | 0005515 | molecular_function | protein binding |
K | 0005737 | cellular_component | cytoplasm |
K | 0006974 | biological_process | DNA damage response |
K | 0008470 | molecular_function | isovaleryl-CoA dehydrogenase activity |
K | 0016491 | molecular_function | oxidoreductase activity |
K | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
K | 0042802 | molecular_function | identical protein binding |
K | 0043565 | molecular_function | sequence-specific DNA binding |
K | 0045892 | biological_process | negative regulation of DNA-templated transcription |
L | 0003677 | molecular_function | DNA binding |
L | 0003995 | molecular_function | acyl-CoA dehydrogenase activity |
L | 0005515 | molecular_function | protein binding |
L | 0005737 | cellular_component | cytoplasm |
L | 0006974 | biological_process | DNA damage response |
L | 0008470 | molecular_function | isovaleryl-CoA dehydrogenase activity |
L | 0016491 | molecular_function | oxidoreductase activity |
L | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
L | 0042802 | molecular_function | identical protein binding |
L | 0043565 | molecular_function | sequence-specific DNA binding |
L | 0045892 | biological_process | negative regulation of DNA-templated transcription |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 32 |
Details | BINDING SITE FOR RESIDUE FAD A 1000 |
Chain | Residue |
A | MET182 |
A | SER268 |
A | VAL420 |
A | ILE423 |
A | TRP424 |
A | GLU425 |
A | GLY426 |
A | SER427 |
A | ASN429 |
A | ILE430 |
A | LEU433 |
A | MET184 |
A | HOH562 |
A | HOH568 |
A | HOH579 |
B | ARG324 |
B | PHE327 |
B | LEU331 |
B | GLN334 |
B | GLU398 |
B | VAL399 |
B | GLY401 |
A | THR185 |
B | GLY402 |
B | HOH565 |
B | HOH572 |
A | GLY189 |
A | GLY190 |
A | SER191 |
A | PHE216 |
A | SER218 |
A | LYS260 |
site_id | AC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL A 542 |
Chain | Residue |
A | ARG71 |
A | TYR72 |
D | ARG256 |
site_id | AC3 |
Number of Residues | 32 |
Details | BINDING SITE FOR RESIDUE FAD B 1000 |
Chain | Residue |
A | ARG324 |
A | VAL326 |
A | PHE327 |
A | LEU331 |
A | GLN334 |
A | MET337 |
A | GLU398 |
A | VAL399 |
A | GLY402 |
A | TYR405 |
A | HOH563 |
B | MET182 |
B | MET184 |
B | THR185 |
B | GLY189 |
B | GLY190 |
B | SER191 |
B | PHE216 |
B | SER218 |
B | LYS260 |
B | SER268 |
B | VAL420 |
B | ILE423 |
B | TRP424 |
B | GLU425 |
B | GLY426 |
B | SER427 |
B | ASN429 |
B | ILE430 |
B | LEU433 |
B | HOH566 |
B | HOH573 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL B 542 |
Chain | Residue |
B | ARG71 |
B | TYR72 |
C | ARG256 |
site_id | AC5 |
Number of Residues | 28 |
Details | BINDING SITE FOR RESIDUE FAD C 1000 |
Chain | Residue |
C | MET182 |
C | MET184 |
C | THR185 |
C | GLY189 |
C | GLY190 |
C | SER191 |
C | PHE216 |
C | SER218 |
C | LYS260 |
C | SER268 |
C | VAL420 |
C | ILE423 |
C | TRP424 |
C | GLU425 |
C | GLY426 |
C | SER427 |
C | ASN429 |
C | ILE430 |
C | LEU433 |
C | HOH564 |
D | ARG324 |
D | PHE327 |
D | LEU331 |
D | GLN334 |
D | MET337 |
D | GLU398 |
D | VAL399 |
D | GLY402 |
site_id | AC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL C 542 |
Chain | Residue |
C | ARG71 |
C | TYR72 |
B | ARG256 |
site_id | AC7 |
Number of Residues | 29 |
Details | BINDING SITE FOR RESIDUE FAD D 1000 |
Chain | Residue |
C | ARG324 |
C | VAL326 |
C | PHE327 |
C | LEU331 |
C | GLN334 |
C | MET337 |
C | GLU398 |
C | VAL399 |
C | GLY401 |
C | GLY402 |
D | MET182 |
D | MET184 |
D | THR185 |
D | GLY189 |
D | GLY190 |
D | SER191 |
D | PHE216 |
D | SER218 |
D | LYS260 |
D | SER268 |
D | VAL420 |
D | ILE423 |
D | TRP424 |
D | GLY426 |
D | SER427 |
D | ASN429 |
D | ILE430 |
D | LEU433 |
D | HOH555 |
site_id | AC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL D 542 |
Chain | Residue |
A | ARG256 |
D | ARG71 |
D | TYR72 |
site_id | AC9 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE FAD E 1000 |
Chain | Residue |
E | MET182 |
E | MET184 |
E | THR185 |
E | GLY189 |
E | GLY190 |
E | SER191 |
E | PHE216 |
E | SER218 |
E | LYS260 |
E | ASN263 |
E | SER268 |
E | VAL420 |
E | ILE423 |
E | TRP424 |
E | GLU425 |
E | GLY426 |
E | SER427 |
E | ASN429 |
E | LEU433 |
E | HOH554 |
F | ARG324 |
F | PHE327 |
F | LEU331 |
F | GLN334 |
F | MET337 |
F | GLU398 |
F | VAL399 |
F | GLY401 |
F | GLY402 |
F | TYR405 |
site_id | BC1 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL E 542 |
Chain | Residue |
E | ARG71 |
E | TYR72 |
site_id | BC2 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE FAD F 1000 |
Chain | Residue |
E | ARG324 |
E | PHE327 |
E | LEU331 |
E | GLN334 |
E | MET337 |
E | GLU398 |
E | VAL399 |
E | GLY401 |
E | GLY402 |
E | HOH557 |
F | MET182 |
F | MET184 |
F | THR185 |
F | GLY189 |
F | GLY190 |
F | SER191 |
F | PHE216 |
F | SER218 |
F | LYS260 |
F | SER268 |
F | VAL420 |
F | ILE423 |
F | TRP424 |
F | GLU425 |
F | GLY426 |
F | SER427 |
F | ASN429 |
F | ILE430 |
F | LEU433 |
F | HOH560 |
site_id | BC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL F 542 |
Chain | Residue |
F | ARG71 |
F | TYR72 |
G | ARG256 |
site_id | BC4 |
Number of Residues | 27 |
Details | BINDING SITE FOR RESIDUE FAD G 1000 |
Chain | Residue |
G | MET182 |
G | MET184 |
G | THR185 |
G | GLY189 |
G | GLY190 |
G | SER191 |
G | PHE216 |
G | SER218 |
G | LYS260 |
G | SER268 |
G | VAL420 |
G | ILE423 |
G | GLY426 |
G | SER427 |
G | ASN429 |
G | LEU433 |
G | HOH561 |
G | HOH565 |
H | ARG324 |
H | VAL326 |
H | PHE327 |
H | LEU331 |
H | MET337 |
H | GLU398 |
H | VAL399 |
H | GLY401 |
H | GLY402 |
site_id | BC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL G 542 |
Chain | Residue |
F | ARG256 |
G | ARG71 |
site_id | BC6 |
Number of Residues | 28 |
Details | BINDING SITE FOR RESIDUE FAD H 1000 |
Chain | Residue |
G | ARG324 |
G | VAL326 |
G | PHE327 |
G | LEU331 |
G | GLN334 |
G | MET337 |
G | GLU398 |
G | VAL399 |
G | GLY401 |
G | GLY402 |
H | MET182 |
H | MET184 |
H | THR185 |
H | GLY189 |
H | GLY190 |
H | SER191 |
H | PHE216 |
H | SER218 |
H | LYS260 |
H | SER268 |
H | VAL420 |
H | ILE423 |
H | TRP424 |
H | GLY426 |
H | SER427 |
H | ASN429 |
H | ILE430 |
H | LEU433 |
site_id | BC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL H 542 |
Chain | Residue |
E | ARG256 |
H | ARG71 |
H | TYR72 |
site_id | BC8 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE FAD I 1000 |
Chain | Residue |
I | MET182 |
I | MET184 |
I | THR185 |
I | GLY189 |
I | GLY190 |
I | SER191 |
I | PHE216 |
I | SER218 |
I | LYS260 |
I | ASN263 |
I | SER268 |
I | VAL420 |
I | ILE423 |
I | TRP424 |
I | GLU425 |
I | GLY426 |
I | SER427 |
I | ASN429 |
J | ARG324 |
J | VAL326 |
J | PHE327 |
J | LEU331 |
J | GLN334 |
J | MET337 |
J | GLU398 |
J | VAL399 |
J | GLY401 |
J | GLY402 |
J | TYR405 |
J | HOH549 |
site_id | BC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL I 542 |
Chain | Residue |
I | ARG71 |
I | TYR72 |
L | ARG256 |
site_id | CC1 |
Number of Residues | 26 |
Details | BINDING SITE FOR RESIDUE FAD J 1000 |
Chain | Residue |
I | ARG324 |
I | VAL326 |
I | PHE327 |
I | LEU331 |
I | GLN334 |
I | MET337 |
I | GLU398 |
I | VAL399 |
I | GLY402 |
J | MET182 |
J | MET184 |
J | THR185 |
J | GLY189 |
J | GLY190 |
J | SER191 |
J | PHE216 |
J | SER218 |
J | LYS260 |
J | SER268 |
J | VAL420 |
J | ILE423 |
J | GLY426 |
J | SER427 |
J | ASN429 |
J | ILE430 |
J | LEU433 |
site_id | CC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CL J 542 |
Chain | Residue |
J | LEU69 |
J | LEU70 |
J | ARG71 |
J | TYR72 |
K | ARG256 |
site_id | CC3 |
Number of Residues | 28 |
Details | BINDING SITE FOR RESIDUE FAD K 1000 |
Chain | Residue |
K | MET182 |
K | MET184 |
K | THR185 |
K | GLY189 |
K | GLY190 |
K | SER191 |
K | PHE216 |
K | SER218 |
K | LYS260 |
K | SER268 |
K | VAL420 |
K | ILE423 |
K | GLU425 |
K | GLY426 |
K | SER427 |
K | ASN429 |
K | LEU433 |
K | HOH559 |
L | ARG324 |
L | VAL326 |
L | PHE327 |
L | LEU331 |
L | GLN334 |
L | MET337 |
L | GLU398 |
L | VAL399 |
L | GLY401 |
L | GLY402 |
site_id | CC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL K 542 |
Chain | Residue |
J | ARG256 |
K | ARG71 |
K | TYR72 |
site_id | CC5 |
Number of Residues | 29 |
Details | BINDING SITE FOR RESIDUE FAD L 1000 |
Chain | Residue |
K | ARG324 |
K | VAL326 |
K | PHE327 |
K | LEU331 |
K | GLN334 |
K | MET337 |
K | GLU398 |
K | VAL399 |
K | GLY402 |
K | HOH558 |
L | MET182 |
L | MET184 |
L | THR185 |
L | GLY189 |
L | GLY190 |
L | SER191 |
L | PHE216 |
L | SER218 |
L | LYS260 |
L | SER268 |
L | VAL420 |
L | ILE423 |
L | TRP424 |
L | GLU425 |
L | GLY426 |
L | SER427 |
L | ASN429 |
L | HOH558 |
L | HOH559 |
site_id | CC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL L 542 |
Chain | Residue |
I | ARG256 |
L | ARG71 |
L | TYR72 |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 84 |
Details | BINDING: BINDING => ECO:0000269|PubMed:18829440 |
Chain | Residue | Details |
A | MET182 | |
B | SER191 | |
B | PHE216 | |
B | SER218 | |
B | ILE423 | |
B | ASN429 | |
C | MET182 | |
C | THR185 | |
C | SER191 | |
C | PHE216 | |
C | SER218 | |
A | THR185 | |
C | ILE423 | |
C | ASN429 | |
D | MET182 | |
D | THR185 | |
D | SER191 | |
D | PHE216 | |
D | SER218 | |
D | ILE423 | |
D | ASN429 | |
E | MET182 | |
A | SER191 | |
E | THR185 | |
E | SER191 | |
E | PHE216 | |
E | SER218 | |
E | ILE423 | |
E | ASN429 | |
F | MET182 | |
F | THR185 | |
F | SER191 | |
F | PHE216 | |
A | PHE216 | |
F | SER218 | |
F | ILE423 | |
F | ASN429 | |
G | MET182 | |
G | THR185 | |
G | SER191 | |
G | PHE216 | |
G | SER218 | |
G | ILE423 | |
G | ASN429 | |
A | SER218 | |
H | MET182 | |
H | THR185 | |
H | SER191 | |
H | PHE216 | |
H | SER218 | |
H | ILE423 | |
H | ASN429 | |
I | MET182 | |
I | THR185 | |
I | SER191 | |
A | ILE423 | |
I | PHE216 | |
I | SER218 | |
I | ILE423 | |
I | ASN429 | |
J | MET182 | |
J | THR185 | |
J | SER191 | |
J | PHE216 | |
J | SER218 | |
J | ILE423 | |
A | ASN429 | |
J | ASN429 | |
K | MET182 | |
K | THR185 | |
K | SER191 | |
K | PHE216 | |
K | SER218 | |
K | ILE423 | |
K | ASN429 | |
L | MET182 | |
L | THR185 | |
B | MET182 | |
L | SER191 | |
L | PHE216 | |
L | SER218 | |
L | ILE423 | |
L | ASN429 | |
B | THR185 |