3TYG
Crystal structure of broad and potent HIV-1 neutralizing antibody PGT128 in complex with a glycosylated engineered gp120 outer domain with miniV3 (eODmV3)
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0019031 | cellular_component | viral envelope |
| L | 0002250 | biological_process | adaptive immune response |
| L | 0003823 | molecular_function | antigen binding |
| L | 0005576 | cellular_component | extracellular region |
| L | 0005615 | cellular_component | extracellular space |
| L | 0005886 | cellular_component | plasma membrane |
| L | 0016064 | biological_process | immunoglobulin mediated immune response |
| L | 0019814 | cellular_component | immunoglobulin complex |
| L | 0070062 | cellular_component | extracellular exosome |
| L | 0071735 | cellular_component | IgG immunoglobulin complex |
| L | 0072562 | cellular_component | blood microparticle |
Functional Information from PROSITE/UniProt
| site_id | PS00290 |
| Number of Residues | 7 |
| Details | IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YSCQVTH |
| Chain | Residue | Details |
| L | TYR192-HIS198 | |
| H | TYR206-HIS212 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 1 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04083, ECO:0000269|PubMed:11188697, ECO:0000269|PubMed:14981267, ECO:0000269|PubMed:23539181, ECO:0000269|PubMed:26972002, ECO:0000269|PubMed:9641677 |
| Chain | Residue | Details |
| A | ASN65 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04083, ECO:0000269|PubMed:11188697, ECO:0000269|PubMed:14981267, ECO:0000269|PubMed:26972002, ECO:0000269|PubMed:9641677 |
| Chain | Residue | Details |
| A | ASN79 | |
| A | ASN98 | |
| A | ASN181 | |
| A | ASN18 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 1 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04083, ECO:0000269|PubMed:11188697, ECO:0000269|PubMed:14981267, ECO:0000269|PubMed:9641677 |
| Chain | Residue | Details |
| A | ASN92 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04083 |
| Chain | Residue | Details |
| A | ASN104 | |
| A | ASN186 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 1 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04083, ECO:0000269|PubMed:21998254, ECO:0000269|PubMed:26972002, ECO:0000269|PubMed:9641677 |
| Chain | Residue | Details |
| A | ASN121 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04083, ECO:0000269|PubMed:11188697, ECO:0000269|PubMed:26972002, ECO:0000269|PubMed:9641677 |
| Chain | Residue | Details |
| A | ASN128 | |
| A | ASP175 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 1 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04083, ECO:0000269|PubMed:17301785, ECO:0000269|PubMed:19965434, ECO:0007744|PDB:2NY7, ECO:0007744|PDB:3IDX, ECO:0007744|PDB:3IDY |
| Chain | Residue | Details |
| A | ASN145 |
| site_id | SWS_FT_FI8 |
| Number of Residues | 1 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04083, ECO:0000269|PubMed:11188697, ECO:0000269|PubMed:14981267 |
| Chain | Residue | Details |
| A | ASN33 |
