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3TTB

Structure of the Thioalkalivibrio paradoxus cytochrome c nitrite reductase in complex with sulfite

Functional Information from GO Data
ChainGOidnamespacecontents
A0016491molecular_functionoxidoreductase activity
A0019645biological_processanaerobic electron transport chain
A0020037molecular_functionheme binding
A0030288cellular_componentouter membrane-bounded periplasmic space
A0042279molecular_functionnitrite reductase (cytochrome, ammonia-forming) activity
A0042597cellular_componentperiplasmic space
A0046872molecular_functionmetal ion binding
B0016491molecular_functionoxidoreductase activity
B0019645biological_processanaerobic electron transport chain
B0020037molecular_functionheme binding
B0030288cellular_componentouter membrane-bounded periplasmic space
B0042279molecular_functionnitrite reductase (cytochrome, ammonia-forming) activity
B0042597cellular_componentperiplasmic space
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues26
DetailsBINDING SITE FOR RESIDUE HEC A 1004
ChainResidue
AHIS113
ALYS188
AARG242
ACYS299
AHIS300
ATYR303
ACYS305
APHE327
AHIS361
AASN486
ASO3526
AALA114
ACO528
AHOH536
AHOH543
AHOH568
AHOH596
AHOH646
AHEC1006
APRO116
AASP125
AHIS126
AVAL129
AARG131
ACYS184
ACYS187

site_idAC2
Number of Residues17
DetailsBINDING SITE FOR RESIDUE HEC A 1005
ChainResidue
ACYS66
AHIS70
AGLN73
APHE77
AASN226
ACYS227
ACYS230
AHIS231
AALA290
AMET384
AARG386
ATYR395
ATHR396
AHIS398
AHOH573
AHOH753
AHEC1003

site_idAC3
Number of Residues24
DetailsBINDING SITE FOR RESIDUE HEC A 1006
ChainResidue
ASER84
APRO116
AARG117
AHIS119
APHE121
AMET122
AASP125
ACYS187
ALYS188
AVAL225
AMET229
AMET295
ACYS296
ACYS299
AHIS300
ACYS379
AHIS383
APRO400
AHOH548
AHOH810
AHOH897
AHOH899
AHEC1004
AHEC1007

site_idAC4
Number of Residues22
DetailsBINDING SITE FOR RESIDUE HEC A 1007
ChainResidue
AHIS300
ALEU364
APHE367
AHIS372
AVAL377
ATHR378
ACYS379
ACYS382
AHIS383
ATHR402
AARG404
AILE427
ALYS431
AASN486
APHE490
AHIS491
AGOL531
AHOH548
AHOH616
AHOH761
AHOH810
AHEC1006

site_idAC5
Number of Residues13
DetailsBINDING SITE FOR RESIDUE HEC A 1008
ChainResidue
ATRP418
AILE427
APHE490
ASER141
ATRP142
AGLN143
ATHR371
AHIS372
APRO403
AALA410
ACYS411
ACYS414
AHIS415

site_idAC6
Number of Residues23
DetailsBINDING SITE FOR RESIDUE HEC A 1002
ChainResidue
ACYS14
ATYR15
AHIS18
AILE21
AHIS25
AVAL33
AASN34
ACYS35
ACYS38
AHIS39
AILE193
ALEU194
ATYR228
APRO233
AHIS234
AARG239
APHE274
AARG276
AARG282
AHOH599
AHOH878
AHEC1001
AHEC1003

site_idAC7
Number of Residues15
DetailsBINDING SITE FOR RESIDUE HEC A 1003
ChainResidue
ALYS29
AHIS30
AVAL33
AHIS37
AALA65
ACYS66
ASER68
ACYS69
AHIS70
ACYS227
AHIS231
ATHR236
AHOH788
AHEC1002
AHEC1005

site_idAC8
Number of Residues27
DetailsBINDING SITE FOR RESIDUE HEC A 1001
ChainResidue
AGLN13
ACYS14
ACYS17
AHIS18
AHIS39
AHIS44
AVAL45
AALA48
ASER49
AALA50
AARG51
AARG51
AARG52
AMET53
AARG56
APRO57
ATHR59
ALEU194
AGLN275
AARG276
ASO4534
AHOH575
AHOH662
AHOH715
AHOH815
AHOH878
AHEC1002

site_idAC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO3 A 526
ChainResidue
APHE109
AARG131
ATYR303
AGLN360
AHIS361
AHOH543
AHOH811
AHEC1004

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 527
ChainResidue
AGLU302
ATYR303
ALYS358
AGLN360
AHOH555
AHOH670

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CO A 528
ChainResidue
AHIS113
AHOH536
AHOH543
AHOH596
AHOH646
AHEC1004

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CO A 529
ChainResidue
AHIS85
AGLU88
AHOH766
AHOH771
AHOH792
AHOH866

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 530
ChainResidue
ALYS393
AGLU394
BARG153

site_idBC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 531
ChainResidue
ALYS90
AARG96
AGLU115
APRO116
AASN486
AHOH589
AHOH616
AHOH810
AHEC1007

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 532
ChainResidue
AMET406
AMET407
AASN408
AARG409

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 533
ChainResidue
ATHR59
AHIS60
ATHR61
ASER62
AHIS223
AHOH805

site_idBC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 534
ChainResidue
AHIS18
ATHR19
AGLN20
AILE21
APHE274
AHOH878
AHEC1001

site_idBC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 535
ChainResidue
AARG170
AARG171

site_idCC1
Number of Residues28
DetailsBINDING SITE FOR RESIDUE HEC B 1004
ChainResidue
BHIS113
BALA114
BPRO116
BASP125
BHIS126
BVAL129
BARG131
BALA179
BCYS184
BCYS187
BLYS188
BARG242
BCYS299
BHIS300
BTYR303
BCYS305
BPHE327
BHIS361
BASN486
BSO3526
BCO528
BHOH544
BHOH551
BHOH576
BHOH604
BHOH652
BHOH825
BHEC1006

site_idCC2
Number of Residues14
DetailsBINDING SITE FOR RESIDUE HEC B 1005
ChainResidue
BCYS66
BHIS70
BGLN73
BPHE77
BASN226
BCYS227
BCYS230
BHIS231
BARG386
BTYR395
BTHR396
BHIS398
BHOH756
BHEC1003

site_idCC3
Number of Residues23
DetailsBINDING SITE FOR RESIDUE HEC B 1006
ChainResidue
BSER84
BPRO116
BARG117
BSER118
BHIS119
BPHE121
BMET122
BASP125
BCYS187
BLYS188
BMET229
BMET295
BCYS296
BCYS299
BHIS300
BHIS383
BPRO400
BHOH541
BHOH556
BHOH813
BHOH817
BHEC1004
BHEC1007

site_idCC4
Number of Residues23
DetailsBINDING SITE FOR RESIDUE HEC B 1007
ChainResidue
BHIS300
BGLU363
BLEU364
BPHE367
BHIS372
BVAL377
BTHR378
BCYS379
BCYS382
BHIS383
BTHR402
BARG404
BILE427
BLYS431
BASN486
BPHE490
BHIS491
BGOL531
BHOH556
BHOH624
BHOH764
BHOH897
BHEC1006

site_idCC5
Number of Residues16
DetailsBINDING SITE FOR RESIDUE HEC B 1008
ChainResidue
BSER141
BTRP142
BGLN143
BTHR371
BHIS372
BASN375
BVAL377
BPRO403
BALA410
BCYS411
BCYS414
BHIS415
BTRP418
BILE427
BPHE490
BHOH863

site_idCC6
Number of Residues24
DetailsBINDING SITE FOR RESIDUE HEC B 1002
ChainResidue
BCYS14
BTYR15
BHIS18
BILE21
BHIS25
BVAL33
BASN34
BCYS35
BCYS38
BHIS39
BTHR59
BILE193
BLEU194
BTYR228
BPRO233
BHIS234
BARG239
BPHE274
BARG276
BARG282
BHOH607
BHOH820
BHEC1001
BHEC1003

site_idCC7
Number of Residues14
DetailsBINDING SITE FOR RESIDUE HEC B 1003
ChainResidue
BLYS29
BHIS30
BVAL33
BHIS37
BALA65
BCYS66
BCYS69
BHIS70
BCYS227
BHIS231
BTHR236
BHOH790
BHEC1002
BHEC1005

site_idCC8
Number of Residues23
DetailsBINDING SITE FOR RESIDUE HEC B 1001
ChainResidue
BGLN13
BCYS14
BCYS17
BHIS18
BHIS39
BHIS44
BVAL45
BALA48
BSER49
BALA50
BARG52
BMET53
BARG56
BPRO57
BTHR59
BLEU194
BARG276
BGLY277
BHOH583
BHOH667
BHOH791
BHOH821
BHEC1002

site_idCC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO3 B 526
ChainResidue
BPHE109
BARG131
BTYR303
BGLN360
BHIS361
BHOH551
BHOH814
BHOH825
BHEC1004

site_idDC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 527
ChainResidue
BGLU302
BTYR303
BLYS358
BGLN360
BHOH563
BHOH675

site_idDC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CO B 528
ChainResidue
BHIS113
BHOH544
BHOH551
BHOH604
BHOH652
BHOH825
BHEC1004

site_idDC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CO B 529
ChainResidue
BHIS85
BGLU88
BHOH769
BHOH774
BHOH794
BHOH899

site_idDC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 530
ChainResidue
AARG153
BLYS393
BGLU394
BHOH885

site_idDC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 531
ChainResidue
BLYS90
BARG96
BGLU115
BPRO116
BASN486
BHOH597
BHOH813
BHEC1007

site_idDC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 532
ChainResidue
BTYR259
BASN331
BTRP368
BHOH546

site_idDC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 533
ChainResidue
BMET406
BMET407
BASN408
BARG409

site_idDC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 534
ChainResidue
BHIS60
BTHR61
BSER62
BHIS223
BHOH808
BHOH880

site_idDC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 535
ChainResidue
BARG170
BARG171

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PDB entries from 2024-10-09

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