Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3TME

Crystal structure of Staphylococcal nuclease variant Delta+NVIAGLA V23E at cryogenic temperature

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0004518molecular_functionnuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues21
DetailsBINDING SITE FOR RESIDUE THP A 150
ChainResidue
APRO11
AHOH152
AHOH164
AHOH173
AHOH187
AHOH189
AHOH192
AHOH201
AHOH203
AHOH213
AHOH232
AARG35
AHOH252
AHOH263
AHOH48
ALYS84
ATYR85
AARG87
ALEU89
ATYR115
ALYS127

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MRD A 151
ChainResidue
AGLU23
ALYS24
ALEU25
APHE34
ATHR62
AHOH162

Functional Information from PROSITE/UniProt
site_idPS01284
Number of Residues11
DetailsTNASE_2 Thermonuclease family signature 2. DKYGRgLAyIY
ChainResidueDetails
AASP83-TYR93

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsACT_SITE: ACT_SITE => ECO:0000269|PubMed:288045
ChainResidueDetails
AARG35
AGLU43
ATYR93

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING:
ChainResidueDetails
AILE41
AASN21
AASP40

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 165
ChainResidueDetails
AASN21metal ligand
AARG35electrostatic stabiliser, hydrogen bond donor
AASP40metal ligand
AILE41metal ligand
AGLU43hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
ATYR93electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon