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3THU

Crystal structure of an enolase from sphingomonas sp. ska58 (efi target efi-501683) with bound mg

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0008927molecular_functionmannonate dehydratase activity
A0009063biological_processamino acid catabolic process
A0016052biological_processcarbohydrate catabolic process
A0016829molecular_functionlyase activity
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0008927molecular_functionmannonate dehydratase activity
B0009063biological_processamino acid catabolic process
B0016052biological_processcarbohydrate catabolic process
B0016829molecular_functionlyase activity
B0046872molecular_functionmetal ion binding
C0000287molecular_functionmagnesium ion binding
C0008927molecular_functionmannonate dehydratase activity
C0009063biological_processamino acid catabolic process
C0016052biological_processcarbohydrate catabolic process
C0016829molecular_functionlyase activity
C0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 500
ChainResidue
AASP211
AGLU237
AGLU263
AHOH459
AHOH527

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 404
ChainResidue
APRO81
APRO81
AVAL82
AVAL82

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 405
ChainResidue
AGLU220
AARG232
APRO233
APRO258
AHOH412
AHOH442
AHOH529
AHOH553

site_idAC4
Number of Residues12
DetailsBINDING SITE FOR RESIDUE GOL A 406
ChainResidue
AASN38
ATYR76
ATRP77
ATYR160
AHIS213
AGLU263
AHIS313
AALA315
AASP317
ATRP403
AHOH527
AHOH643

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 500
ChainResidue
BASP211
BGLU237
BGLU263
BHOH440
BHOH597

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 404
ChainResidue
BPRO81
BVAL82
CPRO81
CVAL82

site_idAC7
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL B 405
ChainResidue
BASN38
BTYR160
BHIS213
BGLU263
BHIS313
BALA315
BASP317
BHOH552
BHOH597
CTYR76
CTRP77

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 406
ChainResidue
BTYR107
BALA113
BARG115
BGLU116
BLEU331
BHIS364
BHOH796
CARG63
CHOH582

site_idAC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 407
ChainResidue
BGLU220
BARG232
BPRO233
BPRO258
BHOH423
BHOH439
BHOH517
BHOH530

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG C 500
ChainResidue
CASP211
CGLU237
CGLU263
CHOH447
CHOH547

site_idBC2
Number of Residues12
DetailsBINDING SITE FOR RESIDUE GOL C 404
ChainResidue
BTYR76
BTRP77
CASN38
CTYR160
CHIS213
CGLU263
CHIS313
CALA315
CASP317
CTRP403
CHOH547
CHOH604

site_idBC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL C 405
ChainResidue
CGLU220
CARG232
CPRO233
CPRO258
CHOH441
CHOH488
CHOH877
CHOH878

site_idBC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL C 406
ChainResidue
BARG63
BHOH607
CTYR107
CALA113
CARG115
CGLU116
CHIS364
CHOH800

Functional Information from PROSITE/UniProt
site_idPS00908
Number of Residues26
DetailsMR_MLE_1 Mandelate racemase / muconate lactonizing enzyme family signature 1. AiAAVDmALwDIkGKiaglPVyqLLG
ChainResidueDetails
AALA86-GLY111

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: Proton donor/acceptor => ECO:0000250
ChainResidueDetails
ATYR160
AHIS213
BTYR160
BHIS213
CTYR160
CHIS213

site_idSWS_FT_FI2
Number of Residues21
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASN38
BGLU263
BARG284
BHIS313
BASP317
BGLU340
CASN38
CHIS123
CGLU263
CARG284
CHIS313
AHIS123
CASP317
CGLU340
AGLU263
AARG284
AHIS313
AASP317
AGLU340
BASN38
BHIS123

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:24697546
ChainResidueDetails
AASP211
AGLU237
BASP211
BGLU237
CASP211
CGLU237

site_idSWS_FT_FI4
Number of Residues3
DetailsSITE: Important for activity and substrate specificity; Ala is observed in family members with high D-mannonate dehydratase activity that have no activity with D-gluconate => ECO:0000250
ChainResidueDetails
AALA315
BALA315
CALA315

223532

PDB entries from 2024-08-07

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