Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0001882 | molecular_function | nucleoside binding |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0003677 | molecular_function | DNA binding |
A | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
A | 0006260 | biological_process | DNA replication |
A | 0006261 | biological_process | DNA-templated DNA replication |
A | 0006281 | biological_process | DNA repair |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE GOL A 1 |
Chain | Residue |
A | HOH191 |
C | DC209 |
C | DC210 |
A | HOH277 |
A | THR544 |
A | TYR545 |
A | PRO548 |
A | PRO579 |
A | ASN580 |
A | ASN583 |
C | HOH18 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A 3 |
Chain | Residue |
A | HOH57 |
A | HOH62 |
A | LYS354 |
A | ASP355 |
A | ASN565 |
A | GLN566 |
site_id | AC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A 4 |
Chain | Residue |
A | HOH235 |
A | ARG313 |
A | TRP318 |
A | ASP551 |
A | LEU552 |
C | HOH327 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A 9 |
Chain | Residue |
A | GLY396 |
A | GLU397 |
A | GLU404 |
A | ALA407 |
A | LEU408 |
A | ARG411 |
site_id | AC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A 10 |
Chain | Residue |
A | HOH92 |
A | HOH180 |
A | ARG425 |
A | PHE724 |
A | TYR811 |
A | HOH846 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL A 11 |
Chain | Residue |
A | ASP452 |
A | ARG596 |
A | ARG596 |
A | ILE599 |
A | ASP826 |
site_id | AC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL A 13 |
Chain | Residue |
A | PRO336 |
A | GLU337 |
A | LYS340 |
A | ALA341 |
A | ASP344 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A 833 |
Chain | Residue |
A | HOH258 |
A | ASP610 |
A | ASP785 |
A | GLU786 |
A | MG834 |
A | N5P836 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG A 834 |
Chain | Residue |
A | ASP610 |
A | TYR611 |
A | ASP785 |
A | MG833 |
A | N5P836 |
site_id | BC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE NA A 835 |
Chain | Residue |
A | PHE413 |
A | ALA414 |
A | ASN415 |
A | LEU416 |
A | TRP417 |
A | GLY418 |
A | ARG419 |
site_id | BC2 |
Number of Residues | 24 |
Details | BINDING SITE FOR RESIDUE N5P A 836 |
Chain | Residue |
A | HOH69 |
A | HOH174 |
A | HOH220 |
A | HOH223 |
A | HOH229 |
A | HOH247 |
A | HOH258 |
A | HOH285 |
A | ARG573 |
A | ASP610 |
A | TYR611 |
A | SER612 |
A | GLN613 |
A | ILE614 |
A | GLU615 |
A | HIS639 |
A | ARG659 |
A | LYS663 |
A | PHE667 |
A | ASP785 |
A | MG833 |
A | MG834 |
B | DOC112 |
C | DG205 |
site_id | BC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE FMT A 837 |
Chain | Residue |
A | HOH197 |
A | LYS767 |
A | VAL810 |
site_id | BC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE FMT A 2 |
Chain | Residue |
A | HOH154 |
A | GLU337 |
A | PRO338 |
A | TYR339 |
A | LYS340 |
A | HOH847 |
B | DG101 |
site_id | BC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE FMT A 838 |
Chain | Residue |
A | HIS443 |
A | THR447 |
site_id | BC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE FMT A 839 |
Chain | Residue |
A | HOH264 |
A | ARG349 |
A | ASP371 |
A | TRP417 |
A | ARG435 |
site_id | BC7 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL B 12 |
Chain | Residue |
A | LYS508 |
B | HOH40 |
B | HOH75 |
B | DC106 |
B | DG107 |
B | HOH117 |
B | HOH136 |
B | HOH202 |
site_id | BC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG B 1401 |
Chain | Residue |
B | HOH1402 |
B | HOH1403 |
B | HOH1404 |
B | HOH1405 |
site_id | BC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL C 2 |
Chain | Residue |
C | HOH19 |
C | HOH149 |
C | HOH190 |
C | DG205 |
C | DG206 |
C | HOH217 |
site_id | CC1 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE GOL C 5 |
Chain | Residue |
A | ASN485 |
B | DG107 |
B | HOH116 |
C | HOH153 |
C | HOH157 |
C | DG211 |
C | DT212 |
C | HOH219 |
C | HOH286 |
site_id | CC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL C 6 |
Chain | Residue |
C | HOH19 |
C | HOH50 |
C | DC207 |
C | DG208 |
site_id | CC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL C 7 |
Chain | Residue |
A | ARG556 |
B | DC103 |
C | DG214 |
C | DT215 |
C | DC216 |
site_id | CC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL C 8 |
Chain | Residue |
A | ARG728 |
C | DG206 |
C | DC207 |
C | HOH322 |
site_id | CC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG C 1501 |
Chain | Residue |
C | HOH1502 |
C | HOH1503 |
C | HOH1504 |
C | HOH1505 |
C | HOH1506 |
Functional Information from PROSITE/UniProt
site_id | PS00447 |
Number of Residues | 20 |
Details | DNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL |
Chain | Residue | Details |
A | ARG659-LEU678 | |