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3T3F

Ternary Structure of the large fragment of Taq DNA polymerase bound to an abasic site and dNITP

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL A 1
ChainResidue
AHOH191
CDC209
CDC210
AHOH277
ATHR544
ATYR545
APRO548
APRO579
AASN580
AASN583
CHOH18

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 3
ChainResidue
AHOH57
AHOH62
ALYS354
AASP355
AASN565
AGLN566

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 4
ChainResidue
AHOH235
AARG313
ATRP318
AASP551
ALEU552
CHOH327

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 9
ChainResidue
AGLY396
AGLU397
AGLU404
AALA407
ALEU408
AARG411

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 10
ChainResidue
AHOH92
AHOH180
AARG425
APHE724
ATYR811
AHOH846

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 11
ChainResidue
AASP452
AARG596
AARG596
AILE599
AASP826

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 13
ChainResidue
APRO336
AGLU337
ALYS340
AALA341
AASP344

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 833
ChainResidue
AHOH258
AASP610
AASP785
AGLU786
AMG834
AN5P836

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 834
ChainResidue
AASP610
ATYR611
AASP785
AMG833
AN5P836

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE NA A 835
ChainResidue
APHE413
AALA414
AASN415
ALEU416
ATRP417
AGLY418
AARG419

site_idBC2
Number of Residues24
DetailsBINDING SITE FOR RESIDUE N5P A 836
ChainResidue
AHOH69
AHOH174
AHOH220
AHOH223
AHOH229
AHOH247
AHOH258
AHOH285
AARG573
AASP610
ATYR611
ASER612
AGLN613
AILE614
AGLU615
AHIS639
AARG659
ALYS663
APHE667
AASP785
AMG833
AMG834
BDOC112
CDG205

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT A 837
ChainResidue
AHOH197
ALYS767
AVAL810

site_idBC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FMT A 2
ChainResidue
AHOH154
AGLU337
APRO338
ATYR339
ALYS340
AHOH847
BDG101

site_idBC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE FMT A 838
ChainResidue
AHIS443
ATHR447

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT A 839
ChainResidue
AHOH264
AARG349
AASP371
ATRP417
AARG435

site_idBC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 12
ChainResidue
ALYS508
BHOH40
BHOH75
BDC106
BDG107
BHOH117
BHOH136
BHOH202

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 1401
ChainResidue
BHOH1402
BHOH1403
BHOH1404
BHOH1405

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL C 2
ChainResidue
CHOH19
CHOH149
CHOH190
CDG205
CDG206
CHOH217

site_idCC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL C 5
ChainResidue
AASN485
BDG107
BHOH116
CHOH153
CHOH157
CDG211
CDT212
CHOH219
CHOH286

site_idCC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL C 6
ChainResidue
CHOH19
CHOH50
CDC207
CDG208

site_idCC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL C 7
ChainResidue
AARG556
BDC103
CDG214
CDT215
CDC216

site_idCC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL C 8
ChainResidue
AARG728
CDG206
CDC207
CHOH322

site_idCC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG C 1501
ChainResidue
CHOH1502
CHOH1503
CHOH1504
CHOH1505
CHOH1506

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

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PDB entries from 2024-09-11

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