3SWO
Crystal structure of a glutaryl-coa dehydrogenase from mycobacterium smegmatis in complex with FADH2
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000062 | molecular_function | fatty-acyl-CoA binding |
A | 0004361 | molecular_function | glutaryl-CoA dehydrogenase activity |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
A | 0033539 | biological_process | fatty acid beta-oxidation using acyl-CoA dehydrogenase |
A | 0046949 | biological_process | fatty-acyl-CoA biosynthetic process |
A | 0050660 | molecular_function | flavin adenine dinucleotide binding |
B | 0000062 | molecular_function | fatty-acyl-CoA binding |
B | 0004361 | molecular_function | glutaryl-CoA dehydrogenase activity |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
B | 0033539 | biological_process | fatty acid beta-oxidation using acyl-CoA dehydrogenase |
B | 0046949 | biological_process | fatty-acyl-CoA biosynthetic process |
B | 0050660 | molecular_function | flavin adenine dinucleotide binding |
C | 0000062 | molecular_function | fatty-acyl-CoA binding |
C | 0004361 | molecular_function | glutaryl-CoA dehydrogenase activity |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
C | 0033539 | biological_process | fatty acid beta-oxidation using acyl-CoA dehydrogenase |
C | 0046949 | biological_process | fatty-acyl-CoA biosynthetic process |
C | 0050660 | molecular_function | flavin adenine dinucleotide binding |
D | 0000062 | molecular_function | fatty-acyl-CoA binding |
D | 0004361 | molecular_function | glutaryl-CoA dehydrogenase activity |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0016627 | molecular_function | oxidoreductase activity, acting on the CH-CH group of donors |
D | 0033539 | biological_process | fatty acid beta-oxidation using acyl-CoA dehydrogenase |
D | 0046949 | biological_process | fatty-acyl-CoA biosynthetic process |
D | 0050660 | molecular_function | flavin adenine dinucleotide binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 34 |
Details | BINDING SITE FOR RESIDUE FDA A 500 |
Chain | Residue |
A | PHE141 |
A | SER370 |
A | THR373 |
A | TYR374 |
A | THR377 |
A | GLU379 |
A | MET380 |
A | PHE395 |
A | HOH429 |
A | HOH446 |
A | HOH457 |
A | LEU143 |
A | EDO503 |
A | HOH521 |
A | HOH534 |
A | HOH1386 |
C | GLN291 |
D | ARG280 |
D | VAL282 |
D | PHE283 |
D | LEU287 |
D | TYR290 |
A | THR144 |
D | THR348 |
D | LEU349 |
D | GLY352 |
D | HOH523 |
D | HOH527 |
A | GLY149 |
A | SER150 |
A | TRP174 |
A | ILE175 |
A | THR176 |
A | LEU217 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A 501 |
Chain | Residue |
A | ARG344 |
A | ALA365 |
A | GLU369 |
D | ARG344 |
D | ALA365 |
D | GLU369 |
site_id | AC3 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE EDO A 503 |
Chain | Residue |
A | ARG102 |
A | VAL107 |
A | LEU111 |
A | THR176 |
A | TYR374 |
A | GLU375 |
A | FDA500 |
A | HOH1386 |
site_id | AC4 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE EDO A 505 |
Chain | Residue |
A | GLY149 |
A | SER150 |
A | LEU248 |
A | LEU251 |
A | ARG255 |
A | GLU375 |
A | GLY376 |
A | HOH841 |
A | HOH1247 |
site_id | AC5 |
Number of Residues | 35 |
Details | BINDING SITE FOR RESIDUE FDA B 500 |
Chain | Residue |
B | PHE141 |
B | LEU143 |
B | THR144 |
B | GLY149 |
B | SER150 |
B | TRP174 |
B | ILE175 |
B | THR176 |
B | LEU217 |
B | SER370 |
B | THR373 |
B | TYR374 |
B | THR377 |
B | GLU379 |
B | MET380 |
B | PHE395 |
B | HOH406 |
B | HOH414 |
B | HOH428 |
B | HOH431 |
B | HOH436 |
B | HOH452 |
B | EDO503 |
B | HOH941 |
C | ARG280 |
C | VAL282 |
C | PHE283 |
C | LEU287 |
C | TYR290 |
C | THR348 |
C | LEU349 |
C | GLY352 |
C | HOH436 |
C | HOH1137 |
D | GLN291 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B 501 |
Chain | Residue |
B | ARG344 |
B | GLU369 |
C | ARG344 |
C | ALA365 |
C | GLU369 |
site_id | AC7 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO B 503 |
Chain | Residue |
B | VAL107 |
B | THR176 |
B | TYR374 |
B | GLU375 |
B | FDA500 |
B | ARG102 |
B | SER103 |
site_id | AC8 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE EDO B 505 |
Chain | Residue |
B | SER150 |
B | LEU248 |
B | LEU251 |
B | ARG255 |
B | GLU375 |
B | GLY376 |
B | MET380 |
B | HOH725 |
B | HOH941 |
B | HOH1919 |
site_id | AC9 |
Number of Residues | 34 |
Details | BINDING SITE FOR RESIDUE FDA C 500 |
Chain | Residue |
A | GLN291 |
B | ARG280 |
B | VAL282 |
B | PHE283 |
B | LEU287 |
B | TYR290 |
B | THR348 |
B | LEU349 |
B | GLY352 |
B | HOH424 |
B | HOH496 |
C | PHE141 |
C | LEU143 |
C | THR144 |
C | GLY149 |
C | SER150 |
C | TRP174 |
C | ILE175 |
C | THR176 |
C | LEU217 |
C | SER370 |
C | THR373 |
C | TYR374 |
C | THR377 |
C | GLU379 |
C | MET380 |
C | PHE395 |
C | HOH401 |
C | HOH419 |
C | HOH434 |
C | HOH464 |
C | HOH472 |
C | HOH478 |
C | EDO503 |
site_id | BC1 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE EDO C 503 |
Chain | Residue |
C | ARG102 |
C | SER106 |
C | VAL107 |
C | LEU111 |
C | THR176 |
C | TYR374 |
C | GLU375 |
C | HOH401 |
C | FDA500 |
site_id | BC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO C 505 |
Chain | Residue |
C | LEU248 |
C | LEU251 |
C | ARG255 |
C | GLU375 |
C | GLY376 |
C | HOH580 |
C | HOH1110 |
site_id | BC3 |
Number of Residues | 34 |
Details | BINDING SITE FOR RESIDUE FDA D 500 |
Chain | Residue |
A | ARG280 |
A | VAL282 |
A | PHE283 |
A | LEU287 |
A | TYR290 |
A | THR348 |
A | LEU349 |
A | GLY352 |
A | HOH471 |
A | HOH547 |
B | GLN291 |
D | PHE141 |
D | LEU143 |
D | THR144 |
D | GLY149 |
D | SER150 |
D | TRP174 |
D | ILE175 |
D | THR176 |
D | LEU217 |
D | SER370 |
D | THR373 |
D | TYR374 |
D | THR377 |
D | GLU379 |
D | MET380 |
D | PHE395 |
D | HOH425 |
D | HOH428 |
D | HOH459 |
D | HOH461 |
D | HOH472 |
D | EDO503 |
D | HOH1132 |
site_id | BC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO D 503 |
Chain | Residue |
D | ARG102 |
D | SER103 |
D | VAL107 |
D | THR176 |
D | TYR374 |
D | GLU375 |
D | FDA500 |
site_id | BC5 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE EDO D 505 |
Chain | Residue |
D | SER150 |
D | PRO152 |
D | LEU248 |
D | LEU251 |
D | ARG255 |
D | GLU375 |
D | GLY376 |
D | HOH677 |
D | HOH1107 |