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3SM8

Crystal Structure of Pseudomonas aeruginosa D-Arginine Dehydrogenase in Complex with an (N5) Flavin Adduct

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005737cellular_componentcytoplasm
A0006525biological_processarginine metabolic process
A0006527biological_processarginine catabolic process
A0008718molecular_functionD-amino-acid dehydrogenase activity
A0016491molecular_functionoxidoreductase activity
Functional Information from PDB Data
site_idAC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL A 1400
ChainResidue
AGLY1211
AHOH2098
AHOH2349
AVAL1212
AARG1213
AASP1237
ATRP1238
AASN1320
AGOL1401
AHOH2021
AHOH2043

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1401
ChainResidue
ASER1123
AGLY1211
AASN1320
AALA1321
AGOL1400
AHOH2108
AHOH2181

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 1402
ChainResidue
APRO1261
AASN1263
AASP1265
ALEU1277
AASP1278
AHOH2111
AHOH2158

site_idAC4
Number of Residues47
DetailsBINDING SITE FOR RESIDUE FNK A 1500
ChainResidue
AILE1009
AGLY1010
AGLY1012
AILE1013
AALA1014
ALEU1031
AGLU1032
AARG1033
AGLU1034
APRO1037
AHIS1040
ASER1041
ATHR1042
AARG1044
ASER1045
AALA1046
AALA1047
AHIS1048
ATHR1050
ATYR1053
AGLU1170
AALA1171
AALA1198
AALA1199
AGLY1200
ATRP1202
AILE1206
AARG1222
AMET1240
ATYR1249
AGLY1303
AARG1305
AGLN1330
AGLY1331
AGLY1332
ATYR1333
AGLY1334
AILE1335
AGLN1336
AHOH2006
AHOH2009
AHOH2011
AHOH2015
AHOH2017
AHOH2022
AHOH2027
AHOH2095

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues5
DetailsBINDING: BINDING => ECO:0000269|PubMed:20809650, ECO:0000269|PubMed:21707047
ChainResidueDetails
AALA1014
AGLU1032
ASER1041
AALA1171
AGLY1331

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Important for specificity toward positively charged substrates => ECO:0000269|PubMed:20809650
ChainResidueDetails
AGLU1087

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PDB entries from 2024-07-10

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