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3SFP

Crystal Structure of the Mono-Zinc-boundform of New Delhi Metallo-beta-Lactamase-1 from Klebsiella pneumoniae

Functional Information from GO Data
ChainGOidnamespacecontents
A0008270molecular_functionzinc ion binding
A0008800molecular_functionbeta-lactamase activity
A0016787molecular_functionhydrolase activity
A0017001biological_processantibiotic catabolic process
A0042597cellular_componentperiplasmic space
A0046677biological_processresponse to antibiotic
A0046872molecular_functionmetal ion binding
B0008270molecular_functionzinc ion binding
B0008800molecular_functionbeta-lactamase activity
B0016787molecular_functionhydrolase activity
B0017001biological_processantibiotic catabolic process
B0042597cellular_componentperiplasmic space
B0046677biological_processresponse to antibiotic
B0046872molecular_functionmetal ion binding
C0008270molecular_functionzinc ion binding
C0008800molecular_functionbeta-lactamase activity
C0016787molecular_functionhydrolase activity
C0017001biological_processantibiotic catabolic process
C0042597cellular_componentperiplasmic space
C0046677biological_processresponse to antibiotic
C0046872molecular_functionmetal ion binding
D0008270molecular_functionzinc ion binding
D0008800molecular_functionbeta-lactamase activity
D0016787molecular_functionhydrolase activity
D0017001biological_processantibiotic catabolic process
D0042597cellular_componentperiplasmic space
D0046677biological_processresponse to antibiotic
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ZN A 280
ChainResidue
AHIS120
AHIS122
AHIS189

site_idAC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE CIT A 281
ChainResidue
ASER251
AALA252
DARG52
DCIT281
AASP43
AVAL50
AARG52
AGLN60
ATHR62
AASN76

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 282
ChainResidue
AARG234
AARG264
BALA257

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 283
ChainResidue
ATHR260
AHIS261
AARG264
AHOH291
BARG264

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 284
ChainResidue
AHOH21
AARG256
BARG256

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 280
ChainResidue
BHIS120
BHIS122
BHIS189
BCYS208

site_idAC7
Number of Residues10
DetailsBINDING SITE FOR RESIDUE CIT B 281
ChainResidue
BASP43
BVAL50
BARG52
BARG52
BGLN60
BTHR62
BASN76
BSER251
BALA252
BALA252

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 282
ChainResidue
AALA257
BARG234
BARG264

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 283
ChainResidue
AARG264
AHOH318
BTHR260
BHIS261
BARG264
BHOH318
BHOH337

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 284
ChainResidue
BHIS159
BSER160
CALA165

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 280
ChainResidue
CHIS120
CHIS122
CHIS189
CHOH320

site_idBC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE CIT C 281
ChainResidue
CASP43
CVAL50
CARG52
CGLN60
CTHR62
CALA74
CASN76
CSER251
CALA252
CALA252

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 282
ChainResidue
CHIS261
CARG264
DARG264

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL C 283
ChainResidue
CARG256
CALA257
CTHR260
CHOH325
DARG234

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL C 284
ChainResidue
CLYS181
CILE198
CASP199
CTHR201
CILE203

site_idBC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL C 285
ChainResidue
CLYS216

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ZN D 280
ChainResidue
DHIS120
DHIS122
DHIS189

site_idBC9
Number of Residues12
DetailsBINDING SITE FOR RESIDUE CIT D 281
ChainResidue
AALA252
ACIT281
DASP43
DVAL50
DARG52
DGLN60
DTHR62
DASN76
DHIS250
DSER251
DALA252
DHOH338

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL D 282
ChainResidue
CARG264
DTHR260
DHIS261
DARG264
DHOH314

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues24
DetailsBINDING: BINDING => ECO:0000269|PubMed:22713171, ECO:0000269|PubMed:25815530
ChainResidueDetails
AHIS120
BHIS189
BCYS208
BHIS250
CHIS120
CHIS122
CASP124
CHIS189
CCYS208
CHIS250
DHIS120
AHIS122
DHIS122
DASP124
DHIS189
DCYS208
DHIS250
AASP124
AHIS189
ACYS208
AHIS250
BHIS120
BHIS122
BASP124

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:22713171
ChainResidueDetails
ALYS211
AASN220
BLYS211
BASN220
CLYS211
CASN220
DLYS211
DASN220

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PDB entries from 2025-06-18

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