3SC6
2.65 Angstrom resolution crystal structure of dTDP-4-dehydrorhamnose reductase (rfbD) from Bacillus anthracis str. Ames in complex with NADP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0005829 | cellular_component | cytosol |
| A | 0008831 | molecular_function | dTDP-4-dehydrorhamnose reductase activity |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| A | 0045226 | biological_process | extracellular polysaccharide biosynthetic process |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0005829 | cellular_component | cytosol |
| B | 0008831 | molecular_function | dTDP-4-dehydrorhamnose reductase activity |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| B | 0045226 | biological_process | extracellular polysaccharide biosynthetic process |
| C | 0000166 | molecular_function | nucleotide binding |
| C | 0005829 | cellular_component | cytosol |
| C | 0008831 | molecular_function | dTDP-4-dehydrorhamnose reductase activity |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| C | 0045226 | biological_process | extracellular polysaccharide biosynthetic process |
| D | 0000166 | molecular_function | nucleotide binding |
| D | 0005829 | cellular_component | cytosol |
| D | 0008831 | molecular_function | dTDP-4-dehydrorhamnose reductase activity |
| D | 0016491 | molecular_function | oxidoreductase activity |
| D | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| D | 0045226 | biological_process | extracellular polysaccharide biosynthetic process |
| E | 0000166 | molecular_function | nucleotide binding |
| E | 0005829 | cellular_component | cytosol |
| E | 0008831 | molecular_function | dTDP-4-dehydrorhamnose reductase activity |
| E | 0016491 | molecular_function | oxidoreductase activity |
| E | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| E | 0045226 | biological_process | extracellular polysaccharide biosynthetic process |
| F | 0000166 | molecular_function | nucleotide binding |
| F | 0005829 | cellular_component | cytosol |
| F | 0008831 | molecular_function | dTDP-4-dehydrorhamnose reductase activity |
| F | 0016491 | molecular_function | oxidoreductase activity |
| F | 0019305 | biological_process | dTDP-rhamnose biosynthetic process |
| F | 0045226 | biological_process | extracellular polysaccharide biosynthetic process |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 20 |
| Details | BINDING SITE FOR RESIDUE NAP A 285 |
| Chain | Residue |
| A | GLY12 |
| A | ALA62 |
| A | THR64 |
| A | ILE79 |
| A | ILE101 |
| A | SER102 |
| A | THR103 |
| A | TYR127 |
| A | LYS131 |
| A | THR150 |
| A | LEU153 |
| A | GLN13 |
| A | HOH296 |
| A | LEU14 |
| A | LYS34 |
| A | LEU37 |
| A | ASP38 |
| A | ILE39 |
| A | CYS60 |
| A | ALA61 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 A 286 |
| Chain | Residue |
| A | LYS156 |
| A | TYR157 |
| A | GLY158 |
| site_id | AC3 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 A 287 |
| Chain | Residue |
| A | ARG111 |
| A | HIS119 |
| site_id | AC4 |
| Number of Residues | 26 |
| Details | BINDING SITE FOR RESIDUE NAP B 285 |
| Chain | Residue |
| B | GLY9 |
| B | GLY12 |
| B | GLN13 |
| B | LEU14 |
| B | LYS34 |
| B | LEU37 |
| B | ASP38 |
| B | ILE39 |
| B | THR40 |
| B | CYS60 |
| B | ALA61 |
| B | ALA62 |
| B | THR64 |
| B | ILE101 |
| B | SER102 |
| B | THR103 |
| B | TYR127 |
| B | LYS131 |
| B | THR150 |
| B | TRP152 |
| B | LEU153 |
| B | HOH291 |
| B | HOH293 |
| B | HOH304 |
| B | HOH324 |
| B | HOH336 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 B 286 |
| Chain | Residue |
| B | THR64 |
| B | LYS65 |
| B | VAL66 |
| B | ASP67 |
| B | ARG248 |
| B | HOH339 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 B 287 |
| Chain | Residue |
| B | TYR157 |
| B | GLY158 |
| B | LYS163 |
| site_id | AC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 B 288 |
| Chain | Residue |
| B | LYS170 |
| B | ARG172 |
| B | MET230 |
| site_id | AC8 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 B 289 |
| Chain | Residue |
| B | ARG111 |
| B | HIS119 |
| site_id | AC9 |
| Number of Residues | 21 |
| Details | BINDING SITE FOR RESIDUE NAP C 285 |
| Chain | Residue |
| C | ASN11 |
| C | GLY12 |
| C | GLN13 |
| C | LEU14 |
| C | LYS34 |
| C | LEU37 |
| C | ASP38 |
| C | ILE39 |
| C | THR40 |
| C | CYS60 |
| C | ALA61 |
| C | ALA62 |
| C | THR64 |
| C | ILE101 |
| C | SER102 |
| C | TYR127 |
| C | LYS131 |
| C | LEU153 |
| C | HOH292 |
| C | HOH305 |
| C | HOH311 |
| site_id | BC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 C 286 |
| Chain | Residue |
| C | VAL66 |
| C | TYR105 |
| C | ARG248 |
| site_id | BC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 C 287 |
| Chain | Residue |
| C | LYS16 |
| C | TYR157 |
| C | GLY158 |
| C | LYS163 |
| site_id | BC3 |
| Number of Residues | 20 |
| Details | BINDING SITE FOR RESIDUE NAP D 285 |
| Chain | Residue |
| D | ASP38 |
| D | ILE39 |
| D | CYS60 |
| D | ALA61 |
| D | ALA62 |
| D | THR64 |
| D | ILE79 |
| D | ILE101 |
| D | SER102 |
| D | THR103 |
| D | TYR127 |
| D | LYS131 |
| D | HOH288 |
| D | HOH301 |
| D | ASN11 |
| D | GLY12 |
| D | GLN13 |
| D | LEU14 |
| D | LYS34 |
| D | LEU37 |
| site_id | BC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 D 286 |
| Chain | Residue |
| D | TYR157 |
| D | GLY158 |
| D | LYS163 |
| site_id | BC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 D 287 |
| Chain | Residue |
| D | VAL66 |
| D | ASP67 |
| D | ARG248 |
| site_id | BC6 |
| Number of Residues | 21 |
| Details | BINDING SITE FOR RESIDUE NAP E 285 |
| Chain | Residue |
| E | ASN11 |
| E | GLY12 |
| E | GLN13 |
| E | LEU14 |
| E | LYS34 |
| E | LEU37 |
| E | ASP38 |
| E | ILE39 |
| E | CYS60 |
| E | ALA61 |
| E | ALA62 |
| E | THR64 |
| E | ILE79 |
| E | ILE101 |
| E | SER102 |
| E | THR103 |
| E | TYR127 |
| E | LYS131 |
| E | LEU153 |
| E | HOH290 |
| E | HOH319 |
| site_id | BC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 E 286 |
| Chain | Residue |
| E | LYS16 |
| E | TYR157 |
| E | GLY158 |
| E | LYS163 |
| site_id | BC8 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 E 287 |
| Chain | Residue |
| E | ARG111 |
| E | HIS119 |
| site_id | BC9 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE SO4 E 288 |
| Chain | Residue |
| E | ARG172 |
| site_id | CC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 E 289 |
| Chain | Residue |
| E | THR64 |
| E | LYS65 |
| E | VAL66 |
| E | ASP67 |
| E | ARG248 |
| site_id | CC2 |
| Number of Residues | 21 |
| Details | BINDING SITE FOR RESIDUE NAP F 285 |
| Chain | Residue |
| F | GLY12 |
| F | GLN13 |
| F | LEU14 |
| F | LYS34 |
| F | LEU37 |
| F | ASP38 |
| F | ILE39 |
| F | CYS60 |
| F | ALA61 |
| F | ALA62 |
| F | THR64 |
| F | ILE101 |
| F | SER102 |
| F | THR103 |
| F | TYR127 |
| F | LYS131 |
| F | LEU153 |
| F | HOH289 |
| F | HOH317 |
| F | HOH322 |
| F | HOH332 |
| site_id | CC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 F 286 |
| Chain | Residue |
| F | ARG4 |
| F | ARG53 |
| F | HIS55 |
| site_id | CC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 F 287 |
| Chain | Residue |
| F | TYR157 |
| F | GLY158 |
| F | LYS163 |
| site_id | CC5 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 F 288 |
| Chain | Residue |
| F | ARG111 |
| F | HIS119 |
