English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

3RW8

Crystal structure of lysozyme in 40% ethanol

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003796	molecular_function	lysozyme activity
A	0005515	molecular_function	protein binding
A	0005576	cellular_component	extracellular region
A	0005615	cellular_component	extracellular space
A	0005737	cellular_component	cytoplasm
A	0005783	cellular_component	endoplasmic reticulum
A	0016231	molecular_function	beta-N-acetylglucosaminidase activity
A	0016798	molecular_function	hydrolase activity, acting on glycosyl bonds
A	0016998	biological_process	cell wall macromolecule catabolic process
A	0031640	biological_process	killing of cells of another organism
A	0042742	biological_process	defense response to bacterium
A	0042802	molecular_function	identical protein binding
A	0050829	biological_process	defense response to Gram-negative bacterium
A	0050830	biological_process	defense response to Gram-positive bacterium
A	0051672	biological_process	obsolete catabolism by organism of cell wall peptidoglycan in other organism

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE EOH A 130

Chain	Residue
A	ASN19
A	GLY22
A	PHE34
A	GLU35
A	ASN37
A	HOH198

site_id	AC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE EOH A 131

Chain	Residue
A	ALA122
A	TRP123

site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EOH A 132

Chain	Residue
A	ARG5
A	CYS6
A	GLU7
A	GLY4

site_id	AC4
Number of Residues	7
Details	BINDING SITE FOR RESIDUE EOH A 133

Chain	Residue
A	GLN57
A	ILE58
A	ASN59
A	TRP63
A	ALA107
A	TRP108
A	EOH134

site_id	AC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE EOH A 134

Chain	Residue
A	TRP62
A	TRP63
A	EOH133

site_id	AC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE EOH A 135

Chain	Residue
A	ASN37
A	TRP62
A	ARG73

site_id	AC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE EOH A 136

Chain	Residue
A	PHE34
A	GLY117
A	THR118
A	EOH137
A	EOH143
A	HOH186

site_id	AC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE EOH A 137

Chain	Residue
A	ASN27
A	ARG114
A	VAL120
A	EOH136
A	EOH141
A	EOH143

site_id	AC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE EOH A 138

Chain	Residue
A	ASN93
A	HOH184
A	HOH203

site_id	BC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EOH A 139

Chain	Residue
A	ASN65
A	ASN74
A	ILE78
A	PRO79

site_id	BC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE EOH A 140

Chain	Residue
A	CYS6
A	CYS127
A	ARG128

site_id	BC3
Number of Residues	7
Details	BINDING SITE FOR RESIDUE EOH A 141

Chain	Residue
A	GLY22
A	TYR23
A	SER24
A	ASN27
A	ARG114
A	EOH137
A	HOH198

site_id	BC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE EOH A 142

Chain	Residue
A	LYS116
A	HOH191

site_id	BC5
Number of Residues	8
Details	BINDING SITE FOR RESIDUE EOH A 143

Chain	Residue
A	ASN27
A	TRP111
A	ARG114
A	LYS116
A	GLY117
A	EOH136
A	EOH137
A	HOH177

site_id	BC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL A 144

Chain	Residue
A	SER24
A	GLY26
A	GLN121

site_id	BC7
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CL A 145

Chain	Residue
A	ASN65
A	GLY67
A	ARG68
A	THR69
A	SER72
A	HOH163
A	HOH180

site_id	BC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CL A 146

Chain	Residue
A	GLY49
A	SER50
A	THR51
A	ASP66
A	ARG68
A	THR69

site_id	BC9
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CL A 147

Chain	Residue
A	PHE38

site_id	CC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CL A 148

Chain	Residue
A	ARG73
A	ASN74

site_id	CC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CL A 149

Chain	Residue
A	LYS1
A	ASN39
A	GLN41
A	ASP66
A	HOH158

site_id	CC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL A 150

Chain	Residue
A	TYR23
A	ALA110
A	ASN113

site_id	CC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CL A 151

Chain	Residue
A	THR43
A	THR43

site_id	CC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CL A 152

Chain	Residue
A	TYR53
A	GLY54
A	ILE55
A	LEU56
A	GLN57
A	SER91

site_id	CC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE NA A 153

Chain	Residue
A	PHE34
A	ALA110
A	HOH161

site_id	CC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE NA A 154

Chain	Residue
A	SER60
A	CYS64
A	SER72
A	ARG73
A	HOH163
A	HOH215

site_id	CC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE NA A 155

Chain	Residue
A	GLN41
A	THR43
A	TYR53

site_id	CC9
Number of Residues	2
Details	BINDING SITE FOR RESIDUE ACT A 156

Chain	Residue
A	HIS15
A	ASN93

Functional Information from PROSITE/UniProt

site_id	PS00128
Number of Residues	19
Details	GLYCOSYL_HYDROL_F22_1 Glycosyl hydrolases family 22 (GH22) domain signature. CnipCsaLlssDItasvnC

Chain	Residue	Details
A	CYS76-CYS94

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	ACT_SITE:

Chain	Residue	Details
A	GLU35
A	ASP52

site_id	SWS_FT_FI2
Number of Residues	1
Details	BINDING:

Chain	Residue	Details
A	ASP101

Catalytic Information from CSA

site_id	MCSA1
Number of Residues	6
Details	M-CSA 203

Chain	Residue	Details
A	GLU35	hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
A	ASN46
A	ASP48
A	SER50
A	ASP52	covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction
A	ASN59

222415

PDB entries from 2024-07-10

PDB statistics

PDBj update info

Contact PDBj

numon