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3RPH

Crystal Structure of ADP/ATP-dependent NAD(P)H-hydrate dehydratase from Bacillus subtilis co-crystallized with ATP/Mg2+.

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005524molecular_functionATP binding
A0016829molecular_functionlyase activity
A0016836molecular_functionhydro-lyase activity
A0046496biological_processnicotinamide nucleotide metabolic process
A0052855molecular_functionADP-dependent NAD(P)H-hydrate dehydratase activity
A0052856molecular_functionNAD(P)HX epimerase activity
A0110051biological_processmetabolite repair
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 277
ChainResidue
ALYS186
AAMP278
APO4279
AHOH316
AHOH324
AHOH439

site_idAC2
Number of Residues23
DetailsBINDING SITE FOR RESIDUE AMP A 278
ChainResidue
AHIS149
ALYS186
AGLY187
ATHR190
AASN206
AGLY207
ALEU209
AALA210
ATHR214
AGLY215
ALEU218
AHIS243
AMG277
APO4279
AHOH285
AHOH289
AHOH316
AHOH327
AHOH334
AHOH353
AALA20
ASER22
ALYS24

site_idAC3
Number of Residues11
DetailsBINDING SITE FOR RESIDUE PO4 A 279
ChainResidue
ALYS24
AGLY212
AGLY213
ATHR214
AGLY215
AASP216
AMG277
AAMP278
AHOH324
AHOH439
AHOH454

site_idAC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE AMP A 280
ChainResidue
AHIS23
ALYS24
ALYS57
AHIS149
APRO150
AVAL161
AHOH327
AHOH368
AHOH436
AHOH439

Functional Information from PROSITE/UniProt
site_idPS01049
Number of Residues11
DetailsYJEF_C_1 YjeF C-terminal domain signature 1. AIAIGPGLPqT
ChainResidueDetails
AALA98-THR108

site_idPS01050
Number of Residues11
DetailsYJEF_C_2 YjeF C-terminal domain signature 2. GGtGDTLTGmI
ChainResidueDetails
AGLY212-ILE222

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues268
DetailsDomain: {"description":"YjeF C-terminal","evidences":[{"source":"HAMAP-Rule","id":"MF_01965","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues9
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"22940582","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3RPZ","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

245663

PDB entries from 2025-12-03

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