3RO6
Crystal structure of Dipeptide Epimerase from Methylococcus capsulatus complexed with Mg ion
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0006518 | biological_process | peptide metabolic process |
| A | 0009063 | biological_process | amino acid catabolic process |
| A | 0016853 | molecular_function | isomerase activity |
| A | 0016854 | molecular_function | racemase and epimerase activity |
| A | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0006518 | biological_process | peptide metabolic process |
| B | 0009063 | biological_process | amino acid catabolic process |
| B | 0016853 | molecular_function | isomerase activity |
| B | 0016854 | molecular_function | racemase and epimerase activity |
| B | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0000287 | molecular_function | magnesium ion binding |
| C | 0006518 | biological_process | peptide metabolic process |
| C | 0009063 | biological_process | amino acid catabolic process |
| C | 0016853 | molecular_function | isomerase activity |
| C | 0016854 | molecular_function | racemase and epimerase activity |
| C | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0000287 | molecular_function | magnesium ion binding |
| D | 0006518 | biological_process | peptide metabolic process |
| D | 0009063 | biological_process | amino acid catabolic process |
| D | 0016853 | molecular_function | isomerase activity |
| D | 0016854 | molecular_function | racemase and epimerase activity |
| D | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| D | 0046872 | molecular_function | metal ion binding |
| E | 0000287 | molecular_function | magnesium ion binding |
| E | 0006518 | biological_process | peptide metabolic process |
| E | 0009063 | biological_process | amino acid catabolic process |
| E | 0016853 | molecular_function | isomerase activity |
| E | 0016854 | molecular_function | racemase and epimerase activity |
| E | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| E | 0046872 | molecular_function | metal ion binding |
| F | 0000287 | molecular_function | magnesium ion binding |
| F | 0006518 | biological_process | peptide metabolic process |
| F | 0009063 | biological_process | amino acid catabolic process |
| F | 0016853 | molecular_function | isomerase activity |
| F | 0016854 | molecular_function | racemase and epimerase activity |
| F | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| F | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG B 400 |
| Chain | Residue |
| B | ASP190 |
| B | GLU216 |
| B | ASP241 |
| B | HOH1183 |
| B | HOH1192 |
| B | HOH1665 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 B 357 |
| Chain | Residue |
| B | ARG9 |
| B | THR10 |
| B | HIS63 |
| site_id | AC3 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 B 358 |
| Chain | Residue |
| B | ARG77 |
| B | ASP78 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL B 359 |
| Chain | Residue |
| B | ARG299 |
| B | PHE335 |
| B | LEU337 |
| B | HOH858 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG A 400 |
| Chain | Residue |
| A | ASP190 |
| A | GLU216 |
| A | ASP241 |
| A | HOH1581 |
| A | HOH1672 |
| A | HOH1775 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 A 357 |
| Chain | Residue |
| A | LYS232 |
| A | ARG235 |
| E | HOH374 |
| E | HOH2323 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 A 358 |
| Chain | Residue |
| A | GLY246 |
| A | PRO247 |
| A | ALA248 |
| A | HOH394 |
| A | HOH1664 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 A 359 |
| Chain | Residue |
| A | ARG9 |
| A | THR10 |
| A | HIS63 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG C 400 |
| Chain | Residue |
| C | ASP190 |
| C | GLU216 |
| C | ASP241 |
| C | HOH1580 |
| C | HOH1666 |
| C | HOH1777 |
| site_id | BC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 C 357 |
| Chain | Residue |
| C | LYS2 |
| C | ARG77 |
| C | ASP78 |
| C | HOH380 |
| C | HOH444 |
| site_id | BC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 C 358 |
| Chain | Residue |
| C | ARG9 |
| C | THR10 |
| C | HIS63 |
| site_id | BC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG D 400 |
| Chain | Residue |
| D | ASP190 |
| D | GLU216 |
| D | ASP241 |
| D | HOH362 |
| D | HOH1438 |
| D | HOH1663 |
| site_id | BC4 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE SO4 D 357 |
| Chain | Residue |
| D | PRO231 |
| D | LYS232 |
| D | HOH363 |
| D | HOH365 |
| D | HOH386 |
| D | HOH1827 |
| F | PRO231 |
| F | LYS232 |
| F | HOH360 |
| site_id | BC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 D 358 |
| Chain | Residue |
| D | VAL8 |
| D | ARG9 |
| D | THR10 |
| D | HIS63 |
| site_id | BC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL D 359 |
| Chain | Residue |
| A | GLY222 |
| D | ALA221 |
| D | GLU242 |
| D | LEU245 |
| D | ASP249 |
| D | HOH561 |
| site_id | BC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG E 400 |
| Chain | Residue |
| E | ASP190 |
| E | GLU216 |
| E | ASP241 |
| E | HOH359 |
| E | HOH1670 |
| E | HOH1773 |
| site_id | BC8 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE SO4 E 357 |
| Chain | Residue |
| A | PRO231 |
| A | LYS232 |
| E | PRO231 |
| E | LYS232 |
| E | HOH362 |
| E | HOH366 |
| E | HOH374 |
| E | HOH375 |
| E | HOH2323 |
| site_id | BC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 E 358 |
| Chain | Residue |
| E | ARG9 |
| E | THR10 |
| E | HIS63 |
| site_id | CC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG F 400 |
| Chain | Residue |
| F | ASP190 |
| F | GLU216 |
| F | ASP241 |
| F | HOH1306 |
| F | HOH1500 |
| F | HOH1679 |
| site_id | CC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 F 357 |
| Chain | Residue |
| F | ARG235 |
| D | LYS232 |
| D | ARG235 |
| D | HOH1827 |
| site_id | CC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 F 358 |
| Chain | Residue |
| F | LYS2 |
| F | ARG77 |
| F | ASP78 |
| F | HOH378 |
Functional Information from PROSITE/UniProt
| site_id | PS00909 |
| Number of Residues | 32 |
| Details | MR_MLE_2 Mandelate racemase / muconate lactonizing enzyme family signature 2. VrvDpNqsydrdgLlrldrlVqelgiefIEQP |
| Chain | Residue | Details |
| B | VAL187-PRO218 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 36 |
| Details | Binding site: {} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 18 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"22392983","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
