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3RFX

Crystal structure of uronate dehydrogenase from Agrobacterium tumefaciens, Y136A mutant complexed with NAD

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0016491molecular_functionoxidoreductase activity
A0050388molecular_functionuronate dehydrogenase activity
B0000166molecular_functionnucleotide binding
B0016491molecular_functionoxidoreductase activity
B0050388molecular_functionuronate dehydrogenase activity
C0000166molecular_functionnucleotide binding
C0016491molecular_functionoxidoreductase activity
C0050388molecular_functionuronate dehydrogenase activity
Functional Information from PDB Data
site_idAC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE NAD A 400
ChainResidue
AALA12
ALEU52
AGLY72
AGLY73
ASER75
AGLY86
AHOH271
AHOH307
AHOH325
AHOH363
AGLY13
AGLN14
ALEU15
AASP34
ALEU35
ASER36
ACYS50
AASP51

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 A 268
ChainResidue
AGLY64
AHIS101
CGLU28
CASN44

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 A 269
ChainResidue
AARG22
AHIS182
AHOH295
AHOH884

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 A 270
ChainResidue
AASP215
AHOH391
CHOH563

site_idAC5
Number of Residues19
DetailsBINDING SITE FOR RESIDUE NAD B 400
ChainResidue
BGLY10
BGLY13
BGLN14
BLEU15
BASP34
BLEU35
BSER36
BCYS50
BASP51
BLEU52
BGLY72
BGLY73
BSER75
BGLY86
BHOH311
BHOH350
BHOH698
BHOH711
BHOH712

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 B 268
ChainResidue
BALA63
BGLY64
BHIS101
BHOH833

site_idAC7
Number of Residues23
DetailsBINDING SITE FOR RESIDUE NAD C 400
ChainResidue
CGLY10
CALA12
CGLY13
CGLN14
CLEU15
CASP34
CLEU35
CSER36
CCYS50
CASP51
CLEU52
CGLY72
CGLY73
CSER75
CGLY86
CHOH288
CHOH292
CHOH356
CHOH380
CHOH508
CHOH713
CHOH716
CHOH873

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 C 268
ChainResidue
CGLY64
CHIS101
CHOH282
CHOH510
CHOH887

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 C 269
ChainResidue
CARG22
CHIS182
CHOH296
CHOH663
CHOH888

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsACT_SITE: Proton acceptor => ECO:0000305|PubMed:21676870
ChainResidueDetails
AALA136
BALA136
CALA136

site_idSWS_FT_FI2
Number of Residues30
DetailsBINDING:
ChainResidueDetails
AGLN14
AARG174
BGLN14
BASP34
BASP51
BLEU71
BSER75
BSER111
BLYS140
BSER165
BCYS166
AASP34
BARG174
CGLN14
CASP34
CASP51
CLEU71
CSER75
CSER111
CLYS140
CSER165
CCYS166
AASP51
CARG174
ALEU71
ASER75
ASER111
ALYS140
ASER165
ACYS166

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PDB entries from 2024-10-09

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