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3RDA

Human Cyclophilin D Complexed with a Fragment

Functional Information from GO Data
ChainGOidnamespacecontents
X0000413biological_processprotein peptidyl-prolyl isomerization
X0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
X0006457biological_processprotein folding
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE MIO X 1
ChainResidue
XARG97
XPHE102
XMET103
XPHE155
XMIO208
XHOH311
XHOH382
XHOH454
XHOH459

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MIO X 208
ChainResidue
XMIO1
XARG97
XGLN105
XALA143
XASN144
XHIS168
XHOH383

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MIO X 209
ChainResidue
XGLY114
XARG124
XASN144
XGLN153
XHOH434
XHOH508

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MIO X 210
ChainResidue
XASN55
XGLY56
XPHE102
XTRP163
XHOH319
XHOH352

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MIO X 211
ChainResidue
XHOH20
XGLY44
XASN45
XALA68
XHOH253
XHOH354
XHOH355
XHOH356

site_idAC6
Number of Residues12
DetailsBINDING SITE FOR RESIDUE MIO X 212
ChainResidue
XLEU81
XCYS82
XTHR83
XGLY89
XTYR90
XLYS91
XCYS203
XMIO213
XHOH238
XHOH271
XHOH377
XHOH379

site_idAC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MIO X 213
ChainResidue
XGLY84
XGLY87
XPHE88
XGLY89
XLYS91
XMIO212
XHOH377

Functional Information from PROSITE/UniProt
site_idPS00170
Number of Residues18
DetailsCSA_PPIASE_1 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. YkgStFHRVIpsFMcQAG
ChainResidueDetails
XTYR90-GLY107

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues156
DetailsDomain: {"description":"PPIase cyclophilin-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00156","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsModified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"UniProtKB","id":"Q99KR7","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues3
DetailsModified residue: {"description":"N6-succinyllysine","evidences":[{"source":"UniProtKB","id":"Q99KR7","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"UniProtKB","id":"Q99KR7","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsModified residue: {"description":"S-nitrosocysteine","evidences":[{"source":"UniProtKB","id":"Q99KR7","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

239803

PDB entries from 2025-08-06

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