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3R9X

Crystal structure of Era in complex with MgGDPNP, nucleotides 1506-1542 of 16S ribosomal RNA, and KsgA

Functional Information from GO Data
ChainGOidnamespacecontents
A0000028biological_processribosomal small subunit assembly
A0003723molecular_functionRNA binding
A0003924molecular_functionGTPase activity
A0005525molecular_functionGTP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005886cellular_componentplasma membrane
A0019843molecular_functionrRNA binding
A0042254biological_processribosome biogenesis
A0042274biological_processribosomal small subunit biogenesis
A0043024molecular_functionribosomal small subunit binding
A0070181molecular_functionsmall ribosomal subunit rRNA binding
B0000154biological_processrRNA modification
B0000179molecular_functionrRNA (adenine-N6,N6-)-dimethyltransferase activity
B0003723molecular_functionRNA binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006364biological_processrRNA processing
B0008168molecular_functionmethyltransferase activity
B0016433molecular_functionrRNA (adenine) methyltransferase activity
B0031167biological_processrRNA methylation
B0032259biological_processmethylation
B0052908molecular_function16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 401
ChainResidue
ASER17
ATHR38
AGNP402
AHOH603
AHOH616

site_idAC2
Number of Residues24
DetailsBINDING SITE FOR RESIDUE GNP A 402
ChainResidue
ASER17
ATHR18
ASER32
APRO33
AGLY36
ATHR37
ATHR38
AGLY61
AASN123
ALYS124
AASP126
ALYS127
ASER155
AALA156
ALEU157
AMG401
AHOH601
AHOH603
AHOH616
AHOH645
AASN13
AVAL14
AGLY15
ALYS16

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MRD A 503
ChainResidue
APRO117
AVAL118
AGLU147
ATHR149
AGLU150
ATYR172
AHOH677

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MRD A 504
ChainResidue
ATYR63
AGLU64
AGLU105
AASN109
APHE110

site_idAC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE ACT B 501
ChainResidue
BTHR160

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT B 502
ChainResidue
BLYS130
BGLU134
BGLN137
BTYR157
BHOH673

Functional Information from PROSITE/UniProt
site_idPS01131
Number of Residues29
DetailsRRNA_A_DIMETH Ribosomal RNA adenine dimethylases signature. VVEvGGGtGnLTkvlLqhplkk..LyVIElD
ChainResidueDetails
BVAL34-ASP62

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00607
ChainResidueDetails
BHIS11
BGLY38
AASN123

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING:
ChainResidueDetails
BLEU13
BGLU60
BASP83
BASN101

site_idSWS_FT_FI3
Number of Residues4
DetailsSITE: Interaction with RNA
ChainResidueDetails
BASN105
BTHR198
BGLN202
BARG204

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PDB entries from 2024-07-31

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