Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3R5D

Pseudomonas aeruginosa DapD (PA3666) apoprotein

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0005737cellular_componentcytoplasm
A0008666molecular_function2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
A0009089biological_processobsolete L-lysine biosynthetic process via diaminopimelate
B0000287molecular_functionmagnesium ion binding
B0005737cellular_componentcytoplasm
B0008666molecular_function2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
B0009089biological_processobsolete L-lysine biosynthetic process via diaminopimelate
C0000287molecular_functionmagnesium ion binding
C0005737cellular_componentcytoplasm
C0008666molecular_function2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
C0009089biological_processobsolete L-lysine biosynthetic process via diaminopimelate
D0000287molecular_functionmagnesium ion binding
D0005737cellular_componentcytoplasm
D0008666molecular_function2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
D0009089biological_processobsolete L-lysine biosynthetic process via diaminopimelate
E0000287molecular_functionmagnesium ion binding
E0005737cellular_componentcytoplasm
E0008666molecular_function2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
E0009089biological_processobsolete L-lysine biosynthetic process via diaminopimelate
F0000287molecular_functionmagnesium ion binding
F0005737cellular_componentcytoplasm
F0008666molecular_function2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity
F0009089biological_processobsolete L-lysine biosynthetic process via diaminopimelate
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL E 345
ChainResidue
DASN139
DGLU163
EASN139
EGLU163
EHOH352
FASN139

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 345
ChainResidue
AHOH375
BASN139
BGLU163
CASN139
CGLU163
AASN139
AGLU163
AHOH360

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsActive site: {"description":"Acyl-anhydride intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_02122","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_02122","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues66
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"22359568","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

253795

PDB entries from 2026-05-20

PDB statisticsPDBj update infoContact PDBjnumon