3QXY
Human SETD6 in complex with RelA Lys310
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005515 | molecular_function | protein binding |
A | 0005634 | cellular_component | nucleus |
A | 0005654 | cellular_component | nucleoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0008168 | molecular_function | methyltransferase activity |
A | 0016279 | molecular_function | protein-lysine N-methyltransferase activity |
A | 0018022 | biological_process | peptidyl-lysine methylation |
A | 0018026 | biological_process | peptidyl-lysine monomethylation |
A | 0019827 | biological_process | stem cell population maintenance |
A | 0032088 | biological_process | negative regulation of NF-kappaB transcription factor activity |
A | 0032259 | biological_process | methylation |
A | 0048863 | biological_process | stem cell differentiation |
A | 0050727 | biological_process | regulation of inflammatory response |
A | 0051059 | molecular_function | NF-kappaB binding |
A | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
B | 0005515 | molecular_function | protein binding |
B | 0005634 | cellular_component | nucleus |
B | 0005654 | cellular_component | nucleoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0008168 | molecular_function | methyltransferase activity |
B | 0016279 | molecular_function | protein-lysine N-methyltransferase activity |
B | 0018022 | biological_process | peptidyl-lysine methylation |
B | 0018026 | biological_process | peptidyl-lysine monomethylation |
B | 0019827 | biological_process | stem cell population maintenance |
B | 0032088 | biological_process | negative regulation of NF-kappaB transcription factor activity |
B | 0032259 | biological_process | methylation |
B | 0048863 | biological_process | stem cell differentiation |
B | 0050727 | biological_process | regulation of inflammatory response |
B | 0051059 | molecular_function | NF-kappaB binding |
B | 1904047 | molecular_function | S-adenosyl-L-methionine binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE SAM A 6734 |
Chain | Residue |
A | ALA73 |
A | HIS252 |
A | TYR285 |
A | TYR297 |
A | PHE299 |
A | EDO480 |
A | HOH533 |
A | HOH568 |
A | HOH580 |
A | HOH606 |
A | HOH652 |
A | GLY74 |
A | HOH668 |
P | LYS310 |
A | TYR75 |
A | ALA222 |
A | TYR223 |
A | ASP248 |
A | ILE249 |
A | LEU250 |
A | ASN251 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A 474 |
Chain | Residue |
A | LEU150 |
A | GLY151 |
A | ARG152 |
A | LEU153 |
A | PHE158 |
A | GLN215 |
site_id | AC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO A 475 |
Chain | Residue |
A | SER120 |
A | ASN183 |
A | GLU187 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A 476 |
Chain | Residue |
A | LEU424 |
A | TYR427 |
A | ALA428 |
A | THR429 |
A | HOH532 |
A | HOH765 |
site_id | AC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A 477 |
Chain | Residue |
A | THR368 |
A | GLU396 |
A | GLU397 |
A | GLY398 |
A | SER399 |
site_id | AC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A 478 |
Chain | Residue |
A | VAL300 |
A | TYR444 |
A | TRP449 |
A | GLN452 |
A | HOH626 |
A | HOH722 |
site_id | AC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO A 479 |
Chain | Residue |
A | ARG30 |
A | LEU34 |
A | LEU36 |
A | HOH573 |
site_id | AC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A 480 |
Chain | Residue |
A | HOH46 |
A | LEU253 |
A | VAL300 |
A | HOH626 |
A | HOH641 |
A | SAM6734 |
B | LYS441 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A 481 |
Chain | Residue |
A | ASN440 |
A | GLU442 |
B | ARG68 |
B | GLY74 |
B | EDO477 |
site_id | BC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A 482 |
Chain | Residue |
A | LEU362 |
A | THR363 |
A | GLU364 |
A | GLU365 |
A | GLU366 |
A | HOH676 |
site_id | BC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A 483 |
Chain | Residue |
A | GLN324 |
A | ASN418 |
A | LEU421 |
A | LEU422 |
A | GLN425 |
A | HOH584 |
A | HOH605 |
site_id | BC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO A 484 |
Chain | Residue |
A | GLU161 |
A | ARG165 |
A | GLU178 |
A | HOH780 |
site_id | BC4 |
Number of Residues | 24 |
Details | BINDING SITE FOR RESIDUE SAM B 6735 |
Chain | Residue |
B | HOH659 |
B | HOH672 |
B | HOH716 |
B | HOH723 |
Q | LYS310 |
B | VAL72 |
B | ALA73 |
B | GLY74 |
B | TYR75 |
B | ALA222 |
B | TYR223 |
B | ASP248 |
B | ILE249 |
B | LEU250 |
B | ASN251 |
B | HIS252 |
B | TYR285 |
B | TYR297 |
B | PHE299 |
B | EDO477 |
B | HOH544 |
B | HOH555 |
B | HOH604 |
B | HOH646 |
site_id | BC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B 474 |
Chain | Residue |
B | VAL300 |
B | TYR444 |
B | GLN452 |
B | HOH581 |
B | HOH649 |
site_id | BC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B 475 |
Chain | Residue |
B | GLY170 |
B | THR171 |
B | GLY172 |
B | GLU175 |
B | GLN314 |
site_id | BC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B 476 |
Chain | Residue |
B | LEU424 |
B | TYR427 |
B | ALA428 |
B | THR429 |
B | HOH622 |
site_id | BC8 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE EDO B 477 |
Chain | Residue |
A | ASN440 |
A | GLU442 |
A | EDO481 |
B | HOH63 |
B | VAL72 |
B | TRP449 |
B | HOH604 |
B | HOH623 |
B | SAM6735 |
site_id | BC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO B 478 |
Chain | Residue |
B | SER120 |
B | ASN183 |
B | GLU187 |
site_id | CC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B 479 |
Chain | Residue |
B | GLU154 |
B | TRP159 |
B | TRP449 |
B | ARG450 |
B | GLN453 |
B | HOH610 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | MOD_RES: N6-methyllysine; by SETD6; alternate => ECO:0000250|UniProtKB:Q04207 |
Chain | Residue | Details |
P | LYS310 | |
B | LEU146 | |
B | ALA247 | |
B | ASP248 | |
B | LEU250 | |
B | ILE275 | |
B | GLY286 | |
B | ALA321 | |
Q | LYS310 | |
A | ALA247 | |
A | ASP248 | |
A | LEU250 | |
A | ILE275 | |
A | GLY286 | |
A | ALA321 | |
B | LEU97 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine; by PKC/PRKCZ => ECO:0000250|UniProtKB:Q04207 |
Chain | Residue | Details |
P | SER311 | |
Q | SER311 | |
B | LYS39 | |
B | PHE203 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | MOD_RES: N6-methylated lysine; by autocatalysis => ECO:0000305|PubMed:30189201 |
Chain | Residue | Details |
A | GLU396 | |
B | GLU396 |