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Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

3QVQ

The structure of an Oleispira antarctica phosphodiesterase OLEI02445 in complex with the product sn-glycerol-3-phosphate

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0006629	biological_process	lipid metabolic process
A	0008081	molecular_function	phosphoric diester hydrolase activity
B	0006629	biological_process	lipid metabolic process
B	0008081	molecular_function	phosphoric diester hydrolase activity
C	0006629	biological_process	lipid metabolic process
C	0008081	molecular_function	phosphoric diester hydrolase activity
D	0006629	biological_process	lipid metabolic process
D	0008081	molecular_function	phosphoric diester hydrolase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	13
Details	BINDING SITE FOR RESIDUE G3P A 301

Chain	Residue
A	HIS14
A	HOH287
A	HOH289
A	MG310
A	HOH533
A	ARG15
A	GLU41
A	ASP43
A	HIS56
A	GLU116
A	PHE150
A	ASN170
A	HOH265

site_id	AC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG A 310

Chain	Residue
A	GLU41
A	ASP43
A	GLU116
A	HOH287
A	G3P301

site_id	AC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG A 311

Chain	Residue
A	HOH296
A	HOH333
A	HOH361
A	HOH371
A	HOH579
C	HOH273

site_id	AC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE MG A 252

Chain	Residue
A	HOH374
A	HOH504
A	HOH605

site_id	AC5
Number of Residues	2
Details	BINDING SITE FOR RESIDUE NA A 253

Chain	Residue
A	PHE197
D	LYS72

site_id	AC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE NA A 255

Chain	Residue
A	GLU90
A	EDO263
A	HOH353
B	HOH460

site_id	AC7
Number of Residues	2
Details	BINDING SITE FOR RESIDUE NA A 256

Chain	Residue
A	GLY48
A	PRO74

site_id	AC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL A 257

Chain	Residue
A	TYR59
A	SER61
A	GLY68

site_id	AC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL A 258

Chain	Residue
A	TRP162
A	PRO163
A	GLU164

site_id	BC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL A 259

Chain	Residue
A	PRO9
A	GLN10
A	HOH292

site_id	BC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CL A 260

Chain	Residue
A	GLN194
A	ASN218
A	ASP219
A	HOH573

site_id	BC3
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CL A 261

Chain	Residue
A	GLN89
A	HOH504

site_id	BC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE PEG A 262

Chain	Residue
A	ALA208
A	GLY209
A	TYR210

site_id	BC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO A 263

Chain	Residue
A	GLU90
A	TYR91
A	NA255
A	HOH664

site_id	BC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE NI A 264

Chain	Residue
A	HIS138
A	HOH378
A	HOH379
B	HIS138
B	HOH342

site_id	BC7
Number of Residues	12
Details	BINDING SITE FOR RESIDUE G3P B 301

Chain	Residue
B	HIS14
B	ARG15
B	GLU41
B	ASP43
B	HIS56
B	GLU116
B	LYS118
B	PHE150
B	ASN170
B	HOH268
B	HOH284
B	MG310

site_id	BC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG B 310

Chain	Residue
B	GLU41
B	ASP43
B	GLU116
B	HOH268
B	G3P301

site_id	BC9
Number of Residues	7
Details	BINDING SITE FOR RESIDUE MG B 311

Chain	Residue
A	HOH334
A	HOH353
A	HOH664
B	ASP204
B	HOH308
B	HOH319
B	HOH386

site_id	CC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG B 252

Chain	Residue
B	GLU164
B	HOH340
B	HOH341
B	HOH600
B	HOH671

site_id	CC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE MG B 253

Chain	Residue
B	ASP58
B	GLU121
B	HOH343

site_id	CC3
Number of Residues	5
Details	BINDING SITE FOR RESIDUE NA B 254

Chain	Residue
B	PHE147
B	ALA158
B	TRP162
B	ILE165
B	ARG167

site_id	CC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL B 255

Chain	Residue
B	SER61
B	ASP67
B	GLY68

site_id	CC5
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CL B 256

Chain	Residue
B	PRO9
B	GLN10

site_id	CC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL B 257

Chain	Residue
B	GLN194
B	ASN218
B	ASP219

site_id	CC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CL B 258

Chain	Residue
B	SER3
B	TYR5
B	HOH561
B	HOH612

site_id	CC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CL B 259

Chain	Residue
A	HOH548
B	PRO52
B	THR98
B	LEU99
B	LEU100

site_id	CC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL B 260

Chain	Residue
A	ASN228
A	GLN229
B	LYS225

site_id	DC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE EDO B 261

Chain	Residue
B	GLY48
B	ASP49
B	LYS72
B	PRO74

site_id	DC2
Number of Residues	15
Details	BINDING SITE FOR RESIDUE G3P C 301

Chain	Residue
C	HIS14
C	ARG15
C	GLU41
C	ASP43
C	HIS56
C	GLU116
C	PHE150
C	ASN170
C	PHE215
C	HOH267
C	HOH270
C	MG310
C	HOH451
C	HOH900
C	HOH925

site_id	DC3
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG C 310

Chain	Residue
C	GLU41
C	ASP43
C	GLU116
C	HOH270
C	G3P301

site_id	DC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG C 311

Chain	Residue
C	SER61
C	THR64
C	HOH314
C	HOH332
C	HOH545
C	HOH556

site_id	DC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE NA C 252

Chain	Residue
C	HOH360
C	HOH723
C	HOH790

site_id	DC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CL C 253

Chain	Residue
C	TYR59
C	SER61
C	ASP67
C	GLY68

site_id	DC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CL C 254

Chain	Residue
C	GLN194
C	ASN218
C	ASP219
C	HOH617

site_id	DC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL C 255

Chain	Residue
C	PRO9
C	GLN10
C	HOH284

site_id	DC9
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CL C 256

Chain	Residue
C	TRP39
C	PRO144
C	HOH601
C	HOH610
C	HOH645

site_id	EC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE PEG C 258

Chain	Residue
C	GLN137
C	TRP139
C	HOH338

site_id	EC2
Number of Residues	15
Details	BINDING SITE FOR RESIDUE G3P D 301

Chain	Residue
D	HIS14
D	ARG15
D	GLU41
D	ASP43
D	HIS56
D	GLU116
D	PHE150
D	ASN170
D	PHE215
D	HOH262
D	HOH263
D	MG310
D	HOH319
D	HOH481
D	HOH817

site_id	EC3
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG D 310

Chain	Residue
D	GLU41
D	ASP43
D	GLU116
D	HOH263
D	G3P301

site_id	EC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE MG D 311

Chain	Residue
D	SER61
D	THR64
D	HOH296
D	HOH304
D	HOH407
D	HOH841

site_id	EC5
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MG D 252

Chain	Residue
C	HOH845
C	HOH860
D	HOH651
D	HOH902
D	HOH903

site_id	EC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE MG D 253

Chain	Residue
D	HOH329
D	HOH354
D	HOH387
D	HOH449

site_id	EC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE NA D 254

Chain	Residue
D	ALA166
D	ARG167
D	ASP186
D	ALA188
D	HOH351

site_id	EC8
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CL D 255

Chain	Residue
D	GLN35
D	TYR238
D	PRO239
D	GLN240

site_id	EC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL D 256

Chain	Residue
D	GLN194
D	ASN218
D	ASP219

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