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3QVE

Crystal structure of human HMG box-containing protein 1, HBP1

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0006355biological_processregulation of DNA-templated transcription
B0003723molecular_functionRNA binding
B0006355biological_processregulation of DNA-templated transcription
C0003723molecular_functionRNA binding
C0006355biological_processregulation of DNA-templated transcription
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 1
ChainResidue
BHOH117
BHIS267
BHIS329
BILE330
BHOH411

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 2
ChainResidue
AHIS267
AHIS329
AILE330
AHOH361

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 3
ChainResidue
CHIS267
CHIS329
CILE330
CHOH489

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 343
ChainResidue
ATYR313
APRO314
ASER315
AHOH376

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B 3
ChainResidue
BEDO27
BARG220
BTRP231
BLYS279
BGLU295
BHOH372
BHOH373
BHOH374

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 4
ChainResidue
BASP260
BGLY261
BLYS263
BPRO284

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 6
ChainResidue
BEDO10
BGLU269
BSER270
BVAL271
BSER276

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 7
ChainResidue
AEDO24
AARG220
ATRP231
ALYS279
AGLU295
AHOH408
CHOH375

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 8
ChainResidue
ASER266
AGLU268
ALYS279
ATHR281
ATHR293
CEDO9
CLEU291

site_idBC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO C 9
ChainResidue
AEDO8
AHOH86
AHIS224
ATHR281
ATHR293
CEDO17
CHIS224
CTHR281
CTHR293

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 10
ChainResidue
BEDO6
BEDO28
BHIS224
BLYS225
BSER270
BVAL271
BHOH356

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO C 11
ChainResidue
AEDO23
CTRP231
CLYS279

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 12
ChainResidue
ALYS225
AGLY226
AHIS254
AASP289
AHOH393

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 13
ChainResidue
AASP260
AGLY261
AASP283
APRO284
AGLY285

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 16
ChainResidue
BGLY256
BTYR257
BHOH477

site_idBC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO C 17
ChainResidue
CEDO9
CSER266
CHIS267
CGLU268
CLYS279
CLEU280
CTHR281
CHOH423

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 18
ChainResidue
ACYS325
AHOH436
BHOH398

site_idBC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO B 19
ChainResidue
BEDO26
BEDO26
BHIS224
BHIS224
BTHR281
BTHR281
BTHR293
BTHR293

site_idCC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 20
ChainResidue
AGLY226
ALYS229
AHOH390

site_idCC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO C 21
ChainResidue
AHOH30
AHOH195
ALYS225
AVAL287
AGLY290
ALEU291
CHIS267
CHOH368

site_idCC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 22
ChainResidue
AEDO23
AEDO24
AHIS224
AHOH409
CHOH344
CHOH423

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 23
ChainResidue
AEDO22
AEDO24
CEDO11
CHIS224
CHOH423

site_idCC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 24
ChainResidue
AEDO7
AEDO22
AEDO23
ATRP231
ALYS279
AHOH409

site_idCC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 25
ChainResidue
BTYR303
BLYS305
BASN306
BLYS307
BASP341
BHOH391

site_idCC7
Number of Residues10
DetailsBINDING SITE FOR RESIDUE EDO B 26
ChainResidue
BEDO19
BEDO19
BHIS224
BSER266
BHIS267
BGLU268
BLYS279
BLEU280
BTHR281
BHOH345

site_idCC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO B 27
ChainResidue
BEDO3
BEDO32
BTRP231
BLYS279
BHOH345

site_idCC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 28
ChainResidue
BEDO10
BGLY226
BLYS229

site_idDC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 30
ChainResidue
BHOH14
BLYS225
BHIS267
BVAL287
BLEU291
BHOH346
BHOH395

site_idDC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 31
ChainResidue
BSER272
BPHE273

site_idDC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO B 32
ChainResidue
BEDO27
BHIS224
BHOH345
BHOH345

site_idDC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO B 33
ChainResidue
BVAL319

site_idDC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO C 34
ChainResidue
CASP260
CGLY261
CLYS263
CPRO284

site_idDC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO C 35
ChainResidue
CTYR303
CLYS305
CASN306
CASP341

site_idDC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 37
ChainResidue
BHOH130
BGLY256
BTYR257
BGLY258
BPRO284
BTHR286
BASP289

site_idDC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO C 38
ChainResidue
CGLY226
CLYS229

site_idDC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 39
ChainResidue
BSER206
BTRP207

site_idEC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 40
ChainResidue
ATYR303
ALYS305
AASN306
AASN306
ALYS307
AASP341
AHOH385
AHOH385

site_idEC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 41
ChainResidue
ASER206
ATRP207

246031

PDB entries from 2025-12-10

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