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3QGD

Crystal structure of the hepatitis C virus NS5B RNA-dependent RNA polymerase complex with (2E)-3-(4-{[(1-{[(13-cyclohexyl-6-oxo-6,7-dihydro-5H-indolo[1,2-d][1,4]benzodiazepin-10-yl)carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-enoic acid and (2R)-4-(2,6-dimethoxypyrimidin-4-yl)-1-[(4-ethylphenyl)sulfonyl]-N-(4-methoxybenzyl)piperazine-2-carboxamide

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0003968molecular_functionRNA-dependent RNA polymerase activity
A0039694biological_processviral RNA genome replication
B0003723molecular_functionRNA binding
B0003968molecular_functionRNA-dependent RNA polymerase activity
B0039694biological_processviral RNA genome replication
Functional Information from PDB Data
site_idAC1
Number of Residues13
DetailsBINDING SITE FOR RESIDUE 23E A 601
ChainResidue
ALEU392
AARG498
AVAL499
AARG503
B23E601
AALA395
AALA396
AILE424
ALEU492
AGLY493
AVAL494
APRO495
APRO496

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 653
ChainResidue
AHIS374
ASER476
AGLY516
AARG517
AHOH732

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 652
ChainResidue
AARG48
AARG222
ACYS223

site_idAC4
Number of Residues17
DetailsBINDING SITE FOR RESIDUE 23E B 601
ChainResidue
AALA400
AARG401
AHIS428
A23E601
BLEU392
BALA393
BALA395
BALA396
BILE424
BLEU492
BGLY493
BVAL494
BPRO495
BPRO496
BARG498
BVAL499
BARG503

site_idAC5
Number of Residues15
DetailsBINDING SITE FOR RESIDUE 26S B 602
ChainResidue
BTYR191
BGLY192
BPHE193
BTYR195
BSER196
BPRO197
BARG200
BSER288
BSER368
BLEU384
BMET414
BILE447
BTYR448
BGLY449
BTYR452

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 656
ChainResidue
ASER1
BLYS379
BARG380

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 653
ChainResidue
BGLY516
BARG517

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 657
ChainResidue
BHIS475
BSER476
BHOH730

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 658
ChainResidue
BSER367
BARG386
BTHR390
BARG394

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P26663
ChainResidueDetails
AASP220
AASP318
AASP319
BASP220
BASP318
BASP319

site_idSWS_FT_FI2
Number of Residues4
DetailsMOD_RES: Phosphoserine; by host => ECO:0000250|UniProtKB:P26662
ChainResidueDetails
ASER29
ASER42
BSER29
BSER42

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PDB entries from 2024-06-12

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