3QGD
Crystal structure of the hepatitis C virus NS5B RNA-dependent RNA polymerase complex with (2E)-3-(4-{[(1-{[(13-cyclohexyl-6-oxo-6,7-dihydro-5H-indolo[1,2-d][1,4]benzodiazepin-10-yl)carbonyl]amino}cyclopentyl)carbonyl]amino}phenyl)prop-2-enoic acid and (2R)-4-(2,6-dimethoxypyrimidin-4-yl)-1-[(4-ethylphenyl)sulfonyl]-N-(4-methoxybenzyl)piperazine-2-carboxamide
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003723 | molecular_function | RNA binding |
| A | 0003968 | molecular_function | RNA-directed RNA polymerase activity |
| A | 0039694 | biological_process | viral RNA genome replication |
| B | 0003723 | molecular_function | RNA binding |
| B | 0003968 | molecular_function | RNA-directed RNA polymerase activity |
| B | 0039694 | biological_process | viral RNA genome replication |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE 23E A 601 |
| Chain | Residue |
| A | LEU392 |
| A | ARG498 |
| A | VAL499 |
| A | ARG503 |
| B | 23E601 |
| A | ALA395 |
| A | ALA396 |
| A | ILE424 |
| A | LEU492 |
| A | GLY493 |
| A | VAL494 |
| A | PRO495 |
| A | PRO496 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 A 653 |
| Chain | Residue |
| A | HIS374 |
| A | SER476 |
| A | GLY516 |
| A | ARG517 |
| A | HOH732 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 A 652 |
| Chain | Residue |
| A | ARG48 |
| A | ARG222 |
| A | CYS223 |
| site_id | AC4 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE 23E B 601 |
| Chain | Residue |
| A | ALA400 |
| A | ARG401 |
| A | HIS428 |
| A | 23E601 |
| B | LEU392 |
| B | ALA393 |
| B | ALA395 |
| B | ALA396 |
| B | ILE424 |
| B | LEU492 |
| B | GLY493 |
| B | VAL494 |
| B | PRO495 |
| B | PRO496 |
| B | ARG498 |
| B | VAL499 |
| B | ARG503 |
| site_id | AC5 |
| Number of Residues | 15 |
| Details | BINDING SITE FOR RESIDUE 26S B 602 |
| Chain | Residue |
| B | TYR191 |
| B | GLY192 |
| B | PHE193 |
| B | TYR195 |
| B | SER196 |
| B | PRO197 |
| B | ARG200 |
| B | SER288 |
| B | SER368 |
| B | LEU384 |
| B | MET414 |
| B | ILE447 |
| B | TYR448 |
| B | GLY449 |
| B | TYR452 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 B 656 |
| Chain | Residue |
| A | SER1 |
| B | LYS379 |
| B | ARG380 |
| site_id | AC7 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 B 653 |
| Chain | Residue |
| B | GLY516 |
| B | ARG517 |
| site_id | AC8 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 B 657 |
| Chain | Residue |
| B | HIS475 |
| B | SER476 |
| B | HOH730 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 B 658 |
| Chain | Residue |
| B | SER367 |
| B | ARG386 |
| B | THR390 |
| B | ARG394 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 236 |
| Details | Domain: {"description":"RdRp catalytic","evidences":[{"source":"PROSITE-ProRule","id":"PRU00539","evidenceCode":"ECO:0000255"}]} |
| site_id | SWS_FT_FI2 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"UniProtKB","id":"P26663","evidenceCode":"ECO:0000250"}]} |
| site_id | SWS_FT_FI3 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"Phosphoserine; by host","evidences":[{"source":"UniProtKB","id":"P26662","evidenceCode":"ECO:0000250"}]} |
