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3Q6J

Structural basis for carbon dioxide binding by 2-ketopropyl coenzyme M Oxidoreductase/Carboxylase

Functional Information from GO Data
ChainGOidnamespacecontents
A0016491molecular_functionoxidoreductase activity
A0042208biological_processpropylene catabolic process
A0050628molecular_function2-oxopropyl-CoM reductase (carboxylating) activity
B0016491molecular_functionoxidoreductase activity
B0042208biological_processpropylene catabolic process
B0050628molecular_function2-oxopropyl-CoM reductase (carboxylating) activity
Functional Information from PDB Data
site_idAC1
Number of Residues25
DetailsBINDING SITE FOR RESIDUE NAP A 1526
ChainResidue
AHIS90
ALYS250
AGLY311
ALEU312
AGLY313
AMET359
AGLU360
AHOH567
AHOH634
AHOH667
AHOH672
ALEU189
AHOH742
AHOH951
AHOH952
AHOH954
AHOH960
AFAD1013
AGLY222
ASER223
ALYS224
ATHR225
AGLU228
AARG245
ATHR246

site_idAC2
Number of Residues37
DetailsBINDING SITE FOR RESIDUE FAD A 1013
ChainResidue
AGLY50
AGLY52
AALA53
AALA54
AASP73
AARG74
ATRP75
AGLY80
ASER81
AALA86
ACYS87
AHIS90
AHIS91
APRO157
AALA158
AALA181
AVAL182
AGLY183
AHIS202
ATYR229
AGLY352
AASP353
AMET359
AGLU360
AMET361
AALA364
AHOH532
AHOH544
AHOH558
AHOH563
AHOH595
AHOH679
AHOH871
AHOH907
AHOH961
ANAP1526
BPHE501

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACN B 1040
ChainResidue
ALEU431
BBCT524
BCOM525

site_idAC4
Number of Residues13
DetailsBINDING SITE FOR RESIDUE KPC A 526
ChainResidue
AALA53
AARG56
APHE57
AGLY79
ACYS82
APRO83
AMET140
AMET361
AARG365
ABCT524
AHOH599
ACO21090
BLEU431

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 527
ChainResidue
ALEU427
AVAL429
ALEU431
AALA447
ASER450
AHOH686

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE BCT B 524
ChainResidue
ALEU431
APHE501
AHIS506
AGLN509
BARG365
BHOH599
BHOH819
BACN1040

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE BCT A 524
ChainResidue
BHIS506
BGLN509
AARG365
AKPC526
AHOH599
AHOH697
AHOH735
BLEU431
BPHE501

site_idAC8
Number of Residues29
DetailsBINDING SITE FOR RESIDUE NAP B 1526
ChainResidue
BHIS90
BGLY222
BSER223
BLYS224
BTHR225
BGLU228
BARG245
BTHR246
BLYS250
BGLY311
BLEU312
BGLY313
BGLU314
BMET359
BGLU360
BPHE390
BHOH556
BHOH615
BHOH655
BHOH662
BHOH775
BHOH840
BHOH903
BHOH926
BHOH981
BHOH999
BHOH1003
BHOH1006
BFAD1014

site_idAC9
Number of Residues39
DetailsBINDING SITE FOR RESIDUE FAD B 1014
ChainResidue
APHE501
AHOH566
BGLY50
BGLY52
BALA53
BALA54
BVAL72
BASP73
BARG74
BTRP75
BGLY80
BSER81
BALA86
BCYS87
BHIS90
BHIS91
BPRO157
BALA158
BALA181
BVAL182
BGLY183
BHIS202
BTYR229
BGLY352
BASP353
BMET359
BGLU360
BMET361
BALA364
BPHE390
BHOH545
BHOH598
BHOH603
BHOH607
BHOH665
BHOH721
BHOH936
BHOH969
BNAP1526

site_idBC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE COM B 525
ChainResidue
BARG56
BPHE57
BGLY79
BCYS82
BPRO83
BMET140
BMET361
BARG365
BACN1040

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CO2 A 1090
ChainResidue
APRO136
AKPC526
AHOH735
BALA430
BLEU431

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 527
ChainResidue
BLEU427
BVAL429
BLEU431
BALA447
BSER450
BHOH574

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:12390015, ECO:0000269|PubMed:16388586, ECO:0000269|PubMed:21192936, ECO:0007744|PDB:1MO9, ECO:0007744|PDB:1MOK, ECO:0007744|PDB:2C3C, ECO:0007744|PDB:2C3D, ECO:0007744|PDB:3Q6J
ChainResidueDetails
AALA53
BASP353
BMET361
BPHE501
ASER81
AALA158
AASP353
AMET361
APHE501
BALA53
BSER81
BALA158

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:12390015, ECO:0000269|PubMed:21192936, ECO:0000305|PubMed:16388586, ECO:0007744|PDB:1MO9, ECO:0007744|PDB:3Q6J
ChainResidueDetails
AARG56
AARG365
BARG56
BARG365

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:21192936, ECO:0000305|PubMed:16388586, ECO:0007744|PDB:3Q6J
ChainResidueDetails
ACYS82
BCYS82

site_idSWS_FT_FI4
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:16388586, ECO:0000269|PubMed:21192936, ECO:0007744|PDB:2C3C, ECO:0007744|PDB:3Q6J
ChainResidueDetails
AGLY222
AARG245
AGLU360
BGLY222
BARG245
BGLU360

Catalytic Information from CSA
site_idMCSA1
Number of Residues5
DetailsM-CSA 378
ChainResidueDetails
ALEU78electrostatic stabiliser, modifies pKa
ACYS82covalent catalysis
ACYS87covalent catalysis
AHIS137modifies pKa
APHE501electrostatic stabiliser

site_idMCSA2
Number of Residues5
DetailsM-CSA 378
ChainResidueDetails
BLEU78electrostatic stabiliser, modifies pKa
BCYS82covalent catalysis
BCYS87covalent catalysis
BHIS137modifies pKa
BPHE501electrostatic stabiliser

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PDB entries from 2024-07-10

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