3PYB
Crystal structure of ent-copalyl diphosphate synthase from Arabidopsis thaliana in complex with 13-aza-13,14-dihydrocopalyl diphosphate
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0006721 | biological_process | terpenoid metabolic process |
| A | 0008299 | biological_process | isoprenoid biosynthetic process |
| A | 0009507 | cellular_component | chloroplast |
| A | 0009686 | biological_process | gibberellin biosynthetic process |
| A | 0009740 | biological_process | gibberellic acid mediated signaling pathway |
| A | 0009905 | molecular_function | ent-copalyl diphosphate synthase activity |
| A | 0010333 | molecular_function | terpene synthase activity |
| A | 0016102 | biological_process | diterpenoid biosynthetic process |
| A | 0016114 | biological_process | terpenoid biosynthetic process |
| A | 0016829 | molecular_function | lyase activity |
| A | 0016853 | molecular_function | isomerase activity |
| A | 0033993 | biological_process | response to lipid |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0006721 | biological_process | terpenoid metabolic process |
| B | 0008299 | biological_process | isoprenoid biosynthetic process |
| B | 0009507 | cellular_component | chloroplast |
| B | 0009686 | biological_process | gibberellin biosynthetic process |
| B | 0009740 | biological_process | gibberellic acid mediated signaling pathway |
| B | 0009905 | molecular_function | ent-copalyl diphosphate synthase activity |
| B | 0010333 | molecular_function | terpene synthase activity |
| B | 0016102 | biological_process | diterpenoid biosynthetic process |
| B | 0016114 | biological_process | terpenoid biosynthetic process |
| B | 0016829 | molecular_function | lyase activity |
| B | 0016853 | molecular_function | isomerase activity |
| B | 0033993 | biological_process | response to lipid |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0000287 | molecular_function | magnesium ion binding |
| C | 0006721 | biological_process | terpenoid metabolic process |
| C | 0008299 | biological_process | isoprenoid biosynthetic process |
| C | 0009507 | cellular_component | chloroplast |
| C | 0009686 | biological_process | gibberellin biosynthetic process |
| C | 0009740 | biological_process | gibberellic acid mediated signaling pathway |
| C | 0009905 | molecular_function | ent-copalyl diphosphate synthase activity |
| C | 0010333 | molecular_function | terpene synthase activity |
| C | 0016102 | biological_process | diterpenoid biosynthetic process |
| C | 0016114 | biological_process | terpenoid biosynthetic process |
| C | 0016829 | molecular_function | lyase activity |
| C | 0016853 | molecular_function | isomerase activity |
| C | 0033993 | biological_process | response to lipid |
| C | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE A3C A 901 |
| Chain | Residue |
| A | ASP149 |
| A | HIS182 |
| A | LYS186 |
| A | GLU193 |
| A | GLN791 |
| A | SER795 |
| A | PHE799 |
| A | HOH846 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE 1PE A 911 |
| Chain | Residue |
| A | LYS444 |
| A | TYR448 |
| A | TYR483 |
| A | TYR427 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE 1PE A 921 |
| Chain | Residue |
| A | SER657 |
| A | PHE658 |
| A | ASP667 |
| A | ASN669 |
| C | SER137 |
| C | LYS140 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE 1PE A 931 |
| Chain | Residue |
| A | ASP380 |
| A | TYR511 |
| site_id | AC5 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE 1PE A 811 |
| Chain | Residue |
| A | LYS140 |
| B | ASN654 |
| B | SER657 |
| B | PHE658 |
| B | PHE661 |
| B | ASP667 |
| B | ASN669 |
| site_id | AC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE 1PE B 911 |
| Chain | Residue |
| B | HOH38 |
| B | TYR427 |
| B | LYS441 |
| B | LYS444 |
| B | GLU445 |
| B | TYR483 |
| B | GLU749 |
| site_id | AC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE 1PE B 931 |
| Chain | Residue |
| B | ILE208 |
| B | ASP377 |
| B | TYR511 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE 1PE B 921 |
| Chain | Residue |
| B | PRO136 |
| B | LYS140 |
| C | ASN654 |
| C | SER657 |
| C | PHE658 |
| C | ASP667 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE 1PE C 911 |
| Chain | Residue |
| C | TYR427 |
| C | LYS444 |
| C | TYR448 |
| C | TYR483 |
| C | GLU749 |
| C | HOH825 |
| site_id | BC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE 1PE C 931 |
| Chain | Residue |
| C | ILE208 |
| C | ASP377 |
| C | ASP379 |
| C | ASP380 |
| C | TYR511 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 9 |
| Details | Motif: {"description":"DXDD motif"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"21602811","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3PYA","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"UniProtKB","id":"C7BKP9","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
