3PX6
Crystal Structure of Bacillus DNA Polymerase I Large Fragment Bound to DNA and ddCTP-dA Mismatch (tautomer) in Closed Conformation
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0003677 | molecular_function | DNA binding |
A | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
A | 0006139 | biological_process | nucleobase-containing compound metabolic process |
A | 0006260 | biological_process | DNA replication |
A | 0006261 | biological_process | DNA-templated DNA replication |
A | 0008408 | molecular_function | 3'-5' exonuclease activity |
D | 0003676 | molecular_function | nucleic acid binding |
D | 0003677 | molecular_function | DNA binding |
D | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
D | 0006139 | biological_process | nucleobase-containing compound metabolic process |
D | 0006260 | biological_process | DNA replication |
D | 0006261 | biological_process | DNA-templated DNA replication |
D | 0008408 | molecular_function | 3'-5' exonuclease activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 23 |
Details | BINDING SITE FOR RESIDUE DCT A 201 |
Chain | Residue |
A | MN1 |
A | SER655 |
A | GLN656 |
A | ILE657 |
A | GLU658 |
A | HIS682 |
A | ARG702 |
A | LYS706 |
A | TYR710 |
A | ASP830 |
A | HOH967 |
A | HOH69 |
A | HOH1050 |
B | DOC29 |
C | DA3 |
C | DG4 |
A | HOH136 |
A | HOH219 |
A | HOH254 |
A | HOH284 |
A | ARG615 |
A | ASP653 |
A | TYR654 |
site_id | AC2 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE DCT A 203 |
Chain | Residue |
A | GLU469 |
A | GLN470 |
A | ASP471 |
A | ARG472 |
A | LEU473 |
A | LEU767 |
A | HIS768 |
A | HOH885 |
A | HOH995 |
site_id | AC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MN A 1 |
Chain | Residue |
A | DCT201 |
A | ASP653 |
A | TYR654 |
A | ASP830 |
site_id | AC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 A 2 |
Chain | Residue |
A | HOH276 |
A | ARG779 |
A | ASN780 |
D | ARG423 |
D | PRO424 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A 3 |
Chain | Residue |
A | ALA353 |
A | HOH1132 |
D | GLU501 |
D | GLY504 |
site_id | AC6 |
Number of Residues | 24 |
Details | BINDING SITE FOR RESIDUE DCT D 202 |
Chain | Residue |
D | MN2 |
D | HOH14 |
D | HOH63 |
D | HOH116 |
D | HOH160 |
D | HOH212 |
D | HOH215 |
D | HOH246 |
D | ARG615 |
D | ASP653 |
D | TYR654 |
D | SER655 |
D | GLN656 |
D | ILE657 |
D | GLU658 |
D | HIS682 |
D | ARG702 |
D | LYS706 |
D | TYR710 |
D | ASP830 |
D | HOH1352 |
E | DOC29 |
F | DA3 |
F | DG4 |
site_id | AC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MN D 2 |
Chain | Residue |
D | DCT202 |
D | ASP653 |
D | TYR654 |
D | ASP830 |
site_id | AC8 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 D 1 |
Chain | Residue |
D | LYS298 |
D | MET299 |
D | ALA300 |
D | ARG343 |
D | ARG677 |
site_id | AC9 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE SO4 D 4 |
Chain | Residue |
D | HOH96 |
Functional Information from PROSITE/UniProt
site_id | PS00447 |
Number of Residues | 20 |
Details | DNA_POLYMERASE_A DNA polymerase family A signature. RrqAKavnYGivYgiSdygL |
Chain | Residue | Details |
A | ARG702-LEU721 |