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3PUD

Crystal structure of Dhydrodipicolinate synthase from Acinetobacter baumannii at 2.8A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008652biological_processamino acid biosynthetic process
A0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
A0009085biological_processlysine biosynthetic process
A0009089biological_processlysine biosynthetic process via diaminopimelate
A0016829molecular_functionlyase activity
A0019877biological_processdiaminopimelate biosynthetic process
A0044281biological_processsmall molecule metabolic process
A0046872molecular_functionmetal ion binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0008652biological_processamino acid biosynthetic process
B0008840molecular_function4-hydroxy-tetrahydrodipicolinate synthase activity
B0009085biological_processlysine biosynthetic process
B0009089biological_processlysine biosynthetic process via diaminopimelate
B0016829molecular_functionlyase activity
B0019877biological_processdiaminopimelate biosynthetic process
B0044281biological_processsmall molecule metabolic process
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 292
ChainResidue
AASN80
ATYR106
BTYR106

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 293
ChainResidue
AARG138
APHE244
AHOH298

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 294
ChainResidue
APRO155
AGOL295
AHOH327
AASP94
ALEU95
AGLU127

site_idAC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL A 295
ChainResidue
AASP94
AGOL294

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 296
ChainResidue
AALA8
AGLY43
ATHR44
ATHR45
ATYR133
ALYS161
AILE203

site_idAC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 292
ChainResidue
AASN108
BTHR44
BGLU47
BALA48
BSER49
BARG138
BASN248
BPRO249
BLEU270

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 293
ChainResidue
BGLY165
BVAL167
BPRO168
BASP200
BHOH297

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 294
ChainResidue
AGLU246
BTHR111
BGLN112
BGLU113
BHOH300
BHOH304

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 295
ChainResidue
BALA8
BGLY43
BTHR44
BTHR45
BTYR133
BLYS161
BILE203

Functional Information from PROSITE/UniProt
site_idPS00665
Number of Residues18
DetailsDHDPS_1 Dihydrodipicolinate synthase signature 1. SIVavGTTGEAstlsmeE
ChainResidueDetails
ASER38-GLU55

site_idPS00666
Number of Residues31
DetailsDHDPS_2 Dihydrodipicolinate synthase signature 2. YNVPgrTgvdLsndtavrlaeipn.IvGIKDA
ChainResidueDetails
ATYR133-ALA163

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PDB entries from 2026-01-14

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