3PU4
Crystal Structure of a vesicular stomatitis virus nucleocapsid-polyU complex
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003723 | molecular_function | RNA binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0019013 | cellular_component | viral nucleocapsid |
| A | 0019029 | cellular_component | helical viral capsid |
| A | 0019083 | biological_process | viral transcription |
| A | 0030430 | cellular_component | host cell cytoplasm |
| A | 0039703 | biological_process | RNA replication |
| A | 1990904 | cellular_component | ribonucleoprotein complex |
| B | 0003723 | molecular_function | RNA binding |
| B | 0005515 | molecular_function | protein binding |
| B | 0019013 | cellular_component | viral nucleocapsid |
| B | 0019029 | cellular_component | helical viral capsid |
| B | 0019083 | biological_process | viral transcription |
| B | 0030430 | cellular_component | host cell cytoplasm |
| B | 0039703 | biological_process | RNA replication |
| B | 1990904 | cellular_component | ribonucleoprotein complex |
| C | 0003723 | molecular_function | RNA binding |
| C | 0005515 | molecular_function | protein binding |
| C | 0019013 | cellular_component | viral nucleocapsid |
| C | 0019029 | cellular_component | helical viral capsid |
| C | 0019083 | biological_process | viral transcription |
| C | 0030430 | cellular_component | host cell cytoplasm |
| C | 0039703 | biological_process | RNA replication |
| C | 1990904 | cellular_component | ribonucleoprotein complex |
| D | 0003723 | molecular_function | RNA binding |
| D | 0005515 | molecular_function | protein binding |
| D | 0019013 | cellular_component | viral nucleocapsid |
| D | 0019029 | cellular_component | helical viral capsid |
| D | 0019083 | biological_process | viral transcription |
| D | 0030430 | cellular_component | host cell cytoplasm |
| D | 0039703 | biological_process | RNA replication |
| D | 1990904 | cellular_component | ribonucleoprotein complex |
| E | 0003723 | molecular_function | RNA binding |
| E | 0005515 | molecular_function | protein binding |
| E | 0019013 | cellular_component | viral nucleocapsid |
| E | 0019029 | cellular_component | helical viral capsid |
| E | 0019083 | biological_process | viral transcription |
| E | 0030430 | cellular_component | host cell cytoplasm |
| E | 0039703 | biological_process | RNA replication |
| E | 1990904 | cellular_component | ribonucleoprotein complex |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IUM A 521 |
| Chain | Residue |
| A | ASP374 |
| A | GLU377 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE IUM A 522 |
| Chain | Residue |
| A | GLU253 |
| A | GLU323 |
| B | ASP343 |
| site_id | AC3 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IUM A 523 |
| Chain | Residue |
| A | ASP358 |
| E | ASP384 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IUM A 524 |
| Chain | Residue |
| A | ASP384 |
| B | ASP358 |
| site_id | AC5 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IUM B 525 |
| Chain | Residue |
| B | ASP123 |
| B | GLU377 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE IUM B 526 |
| Chain | Residue |
| B | GLU253 |
| B | GLU323 |
| C | ASP343 |
| site_id | AC7 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE IUM B 527 |
| Chain | Residue |
| B | ASP384 |
| site_id | AC8 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IUM C 528 |
| Chain | Residue |
| C | ASP374 |
| C | GLU377 |
| site_id | AC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE IUM C 529 |
| Chain | Residue |
| C | GLU253 |
| C | GLU323 |
| D | ASP343 |
| site_id | BC1 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IUM C 530 |
| Chain | Residue |
| C | ASP384 |
| D | ASP358 |
| site_id | BC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IUM D 531 |
| Chain | Residue |
| D | ASP123 |
| D | GLU377 |
| site_id | BC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE IUM D 532 |
| Chain | Residue |
| D | GLU253 |
| D | GLU323 |
| E | ASP343 |
| site_id | BC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IUM E 533 |
| Chain | Residue |
| E | ASP374 |
| E | GLU377 |
| site_id | BC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE IUM E 534 |
| Chain | Residue |
| A | ASP343 |
| E | GLU253 |
| E | GLU323 |
| site_id | BC6 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IUM E 535 |
| Chain | Residue |
| D | ASP384 |
| E | ASP358 |
| site_id | BC7 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE IUM R 536 |
| Chain | Residue |
| R | U6 |
| site_id | BC8 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE IUM R 537 |
| Chain | Residue |
| R | U15 |
| site_id | BC9 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE IUM R 538 |
| Chain | Residue |
| R | U24 |
| site_id | CC1 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IUM R 539 |
| Chain | Residue |
| R | U31 |
| R | U33 |
| site_id | CC2 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE IUM R 540 |
| Chain | Residue |
| R | U42 |
