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3PN4

Crystal structure of Arabidopsis thaliana petide deformylase 1B (AtPDF1B) in complex with actinonin (crystallized in PEG-550-MME)

Functional Information from GO Data
ChainGOidnamespacecontents
A0042586molecular_functionpeptide deformylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues16
DetailsBINDING SITE FOR RESIDUE BB2 A 501
ChainResidue
AGLY41
ATYR98
AARG129
AHIS133
AGLU134
AHIS137
AZN1001
AHOH1135
AILE42
AGLY43
AGLN48
APHE87
AASP88
AGLY90
ACYS91
ALEU92

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 1001
ChainResidue
AGLN48
ACYS91
AHIS133
AHIS137
ABB2501

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE ZN A 1002
ChainResidue
AASP40
AGLU63
AHOH1075
AHOH1171
AHOH1172
AHOH1212
AHOH1213
AHOH1226

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 1003
ChainResidue
AGLU66
AGLU160
AGLU179
AZN1004
AHOH1244

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 1004
ChainResidue
AMET1
AGLU66
AGLU157
AGLU160
AZN1003
AHOH1244

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ZN A 1005
ChainResidue
AASP30
AASP34
AGLU69

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues15
DetailsCompositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsActive site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues3
DetailsBinding site: {}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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